Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49330 142 / 4e-43 MYB PFG3, ATMYB111 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) AT2G16720 140 / 7e-43 MYB AtY49, AtMYB7 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) AT1G22640 138 / 2e-42 MYB AtMYB3 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) AT2G47460 140 / 4e-42 MYB PFG1, ATMYB12 PRODUCTION OF FLAVONOL GLYCOSIDES 1, myb domain protein 12 (.1) AT4G21440 138 / 2e-41 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT3G62610 137 / 4e-41 MYB PFG2, ATMYB11 PRODUCTION OF FLAVONOL GLYCOSIDES 2, myb domain protein 11 (.1) AT3G23250 136 / 4e-41 MYB ATMYB15, ATY19 myb domain protein 15 (.1.2) AT4G09460 134 / 4e-41 MYB ATMYB6, ATMYB8 myb domain protein 6 (.1) AT3G02940 135 / 1e-40 MYB ATMYB107 myb domain protein 107 (.1) AT4G28110 135 / 1e-40 MYB ATMYB41 myb domain protein 41 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033438 [exp] 187 / 7e-61 AT1G22640 194 / 2e-61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) Lus10000470 [exp] 180 / 2e-58 AT2G16720 196 / 2e-61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Lus10033889 [exp] 141 / 6e-43 AT3G23250 239 / 1e-78 myb domain protein 15 (.1.2) Lus10030378 [exp] 137 / 3e-41 AT3G61250 341 / 8e-118 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Lus10009448 [exp] 136 / 3e-41 AT4G09460 290 / 2e-99 myb domain protein 6 (.1) Lus10036453 [exp] 135 / 8e-41 AT5G49330 237 / 1e-76 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) Lus10015713 [exp] 137 / 9e-41 AT5G60890 162 / 5e-47 ALTERED TRYPTOPHAN REGULATION 1, myb domain protein 34 (.1) Lus10003557 [exp] 135 / 1e-40 AT3G23250 239 / 4e-78 myb domain protein 15 (.1.2) Lus10001548 [exp] 134 / 1e-40 AT4G09460 291 / 2e-99 myb domain protein 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G221800 [exp] 162 / 2e-51 AT4G38620 197 / 5e-62 myb domain protein 4 (.1) Potri.018G049401 [exp] 154 / 2e-48 AT2G16720 190 / 4e-59 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Potri.018G049600 [exp] 154 / 3e-48 AT2G16720 192 / 4e-60 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Potri.014G100800 [exp] 152 / 7e-48 AT2G16720 207 / 3e-66 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Potri.001G086700 [exp] 150 / 8e-47 AT5G49330 203 / 6e-64 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) Potri.003G144200 [exp] 150 / 1e-46 AT5G49330 205 / 2e-64 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) Potri.002G173900 [exp] 150 / 2e-46 AT3G13540 207 / 4e-66 myb domain protein 5 (.1) Potri.018G049200 [exp] 153 / 4e-46 AT2G16720 189 / 8e-57 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Potri.003G144300 [exp] 147 / 2e-45 AT1G22640 197 / 1e-62 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) Potri.006G275900 [exp] 143 / 1e-43 AT1G22640 186 / 1e-57 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10000008 pacid=23170262 polypeptide=Lus10000008 locus=Lus10000008.g ID=Lus10000008.BGIv1.0 annot-version=v1.0 ATGGGGAGGAGCCCTTGTTGTTCAAAGGAAGGAATGAACAGAGGCGCATGGACAGCTGAGGAGGACCAGCTCCTGACCCGCTACATCCAATCCCACGGAA TTGGAAAATGGCGTAACCTACCGAAGAAAGCTGGCCTGAACCGGTGCGGCAAGAGCTGCCGCCTCCGGTGGCTCAATTACTTGCGCCCTGACATCAAGCG CGGCAACATTTCCCCCGACGAGGAAGACCTTATCATCCGCCTCCACAAACTCTTAGGCAACCGGTAG
AA sequence Show only first row Show all	>Lus10000008 pacid=23170262 polypeptide=Lus10000008 locus=Lus10000008.g ID=Lus10000008.BGIv1.0 annot-version=v1.0 MGRSPCCSKEGMNRGAWTAEEDQLLTRYIQSHGIGKWRNLPKKAGLNRCGKSCRLRWLNYLRPDIKRGNISPDEEDLIIRLHKLLGNR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49330	MYB	PFG3, ATMYB111	PRODUCTION OF FLAVONOL GLYCOSI...		Lus10000008 [exp]	0	1
AT1G47550		SEC3A	exocyst complex component sec3...		Lus10001022 [exp]	1.0	1.0000
AT5G67440		MEL2, NPY3	NAKED PINS IN YUC MUTANTS 3, M...		Lus10025193 [exp]	1.4	1.0000
AT4G14130		XTR7, XTH15	xyloglucan endotransglycosylas...		Lus10008888 [exp]	1.7	1.0000
					Lus10009177 [exp]	2.0	1.0000
					Lus10035026 [exp]	2.2	1.0000
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Lus10011252 [exp]	6.9	1.0000
					Lus10026785 [exp]	7.5	1.0000
					Lus10001123 [exp]	8.5	1.0000
					Lus10028048 [exp]	8.5	1.0000
AT5G38435		SPH8	S-protein homologue 8 (.1)		Lus10029384 [exp]	9.5	1.0000

Compare expression of checked genes

Lus10000008 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.