Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17680 278 / 8e-83 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G18360 253 / 3e-75 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G46260 248 / 2e-72 disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G41540 240 / 7e-70 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G41750 240 / 7e-70 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT4G08450 239 / 4e-69 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G12010 234 / 1e-67 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G63750 233 / 1e-67 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3) AT1G72840 232 / 3e-67 Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT4G16890 232 / 8e-67 BAL, SNC1 SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1, BALL, disease resistance protein (TIR-NBS-LRR class), putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026201 [exp] 955 / 0 AT5G17680 511 / 1e-160 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10005588 [exp] 693 / 0 AT5G17680 499 / 2e-156 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10042465 [exp] 496 / 2e-175 AT5G46490 151 / 3e-40 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10041078 [exp] 389 / 2e-127 AT5G17680 399 / 6e-126 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10030345 [exp] 376 / 4e-120 AT5G17680 528 / 5e-168 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10029722 [exp] 314 / 8e-97 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10041060 [exp] 300 / 9e-91 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10016029 [exp] 288 / 6e-87 AT4G12010 451 / 2e-138 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10012246 [exp] 276 / 4e-84 AT4G12010 396 / 9e-122 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G068300 [exp] 375 / 1e-119 AT5G17680 580 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G068200 [exp] 366 / 4e-116 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070700 [exp] 350 / 5e-109 AT5G17680 722 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G010800 [exp] 348 / 1e-108 AT5G17680 592 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070565 [exp] 337 / 5e-104 AT5G17680 482 / 3e-148 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070001 [exp] 337 / 5e-104 AT5G17680 481 / 5e-148 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G097100 [exp] 335 / 5e-104 AT4G12010 521 / 8e-165 Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.019G069500 [exp] 332 / 1e-101 AT5G17680 711 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G098900 [exp] 325 / 1e-100 AT5G17680 477 / 6e-148 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G097800 [exp] 323 / 1e-99 AT5G17680 512 / 3e-160 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF07725 [flax] [poplar] LRR_3 Leucine Rich Repeat CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10000121 pacid=23155171 polypeptide=Lus10000121 locus=Lus10000121.g ID=Lus10000121.BGIv1.0 annot-version=v1.0 ATGAAAACACGTCTTTCCCGTACCAAAGTTCTCATTGTCCTTGACGATGTTGAGGACCCAGTAGCATTGCACAACTTGTTAGACAAACAGCCTCATACTC TTTTTGGTCCTGGGAGCAGGATCTTGGTGACAAGTAGGGATCACCAGGTTCTTTACAATGTATGTGATGAAGTATACGAGCTCAAGGGACTGGATGACTA CGAATCACTTCAACTGTTCACCTCAAATGCTTTCAAAGAAGATCCTACGGAGGAATCTGTAGAGCTTTCATTGAGAGCCATACGTTACCCATCAGGCAAC CCCTTGGCGCTTATAGTTCTTGCAAAATCTTTGTATGGGAGGAGTAAGGAGTACTGGGAAAGTGTCTTGGTGAGGCTGCAAAAGGCACCCAATAGAAAAG TTCAGAATGTCTTGAGAATCAGTTACGATGGGTTAGACCGTGAAGAGAAAAGTGCTTTTCTTGATGTTGCTTGCTTCTATAAAGGAGAGAGTCGAGCTCA TGTGAAGTCCATGCTAGATGGCTCTTATGGTGATGGGTCATCTGAGAATATCATTACATCGTTGACAGACAGGGCTCTGGTGGGCATTGGGCATGATGGG CGTACAGTTATGATGCATGATTTGTTGCAGGAGATGGGTCGAGGTATTGTGAATGAGGAATCTGATGATCCAGGAGAACGAAGTAGGCTGTGGAATCCAA ACGATGTCTATGATGTGCTTGCTAGAAAAGGGGGAACGAGAAGAATCAAAGGCATATCCATGGAGTTATCTGGTGCAGGAGAGATGCATCTAGACTCCGA TGCCTTCGCGAAGATGACTCGGCTAAGAGTCCTTAGGTTCTATTTGCCACGGGATGGAAACGACAACCACACTGCAATGCTGGTGCCTACAGAGGGCCTT CAATATCTTTCCAATCAGTTGATGAGCATCCATTGGCCTCGATTAAATTCGAGTTCTCTTCCACCAACGTTTTGTGCAGAAAACCTGATTGATCTTCGCC TTCCTTATAGTACCGTCAAGCATCTTTGGACTGGCATCCAGAATCTTGGGAGTTTGAAATACGTTGACCTCAGCTACTGTAAAAACCTGGTGGAGTTGCC TGACTTATCCCATGCCAAAAGAATTGAGGACATGTACCTTTTGGGATGCGAAAGCTTAGAGGGAATCCCATCATATATTCAGCAGCTGGAGAATCTAGCA AACTTCAACATCTGGAACTGTAAGAGCCTTCCAGATCTTCCAACCCAGTTTACATCAAAATTTATAAACTCTCTGTCTCTATCCGCCGAGAACTGCCCTG CACTCACAAACTATGAGCAAGTATACTTCGGTCCCGATGAACACCATCAGATCGAAGAAGAACCTGATGAAAATGCACTTGAACATAACTGA
AA sequence Show only first row Show all	>Lus10000121 pacid=23155171 polypeptide=Lus10000121 locus=Lus10000121.g ID=Lus10000121.BGIv1.0 annot-version=v1.0 MKTRLSRTKVLIVLDDVEDPVALHNLLDKQPHTLFGPGSRILVTSRDHQVLYNVCDEVYELKGLDDYESLQLFTSNAFKEDPTEESVELSLRAIRYPSGN PLALIVLAKSLYGRSKEYWESVLVRLQKAPNRKVQNVLRISYDGLDREEKSAFLDVACFYKGESRAHVKSMLDGSYGDGSSENIITSLTDRALVGIGHDG RTVMMHDLLQEMGRGIVNEESDDPGERSRLWNPNDVYDVLARKGGTRRIKGISMELSGAGEMHLDSDAFAKMTRLRVLRFYLPRDGNDNHTAMLVPTEGL QYLSNQLMSIHWPRLNSSSLPPTFCAENLIDLRLPYSTVKHLWTGIQNLGSLKYVDLSYCKNLVELPDLSHAKRIEDMYLLGCESLEGIPSYIQQLENLA NFNIWNCKSLPDLPTQFTSKFINSLSLSAENCPALTNYEQVYFGPDEHHQIEEEPDENALEHN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17680			disease resistance protein (TI...		Lus10000121 [exp]	0	1
AT5G17680			disease resistance protein (TI...		Lus10026201 [exp]	1.0	0.8186
AT5G42390		SPP	stromal processing peptidase, ...		Lus10041263 [exp]	25.6	0.7676
AT1G73970			unknown protein		Lus10036972 [exp]	26.8	0.7605
AT5G02250		ATMTRNASEII, RN...	ribonucleotide reductase 1, EM...		Lus10024387 [exp]	29.3	0.7643
AT2G45700			sterile alpha motif (SAM) doma...		Lus10038078 [exp]	29.8	0.7770
AT4G02750			Tetratricopeptide repeat (TPR)...		Lus10013540 [exp]	67.4	0.7324
AT5G40390		RS5, SIP1	seed imbibition 1-like, raffin...		Lus10022241 [exp]	80.5	0.6895

Compare expression of checked genes

Lus10000121 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.