Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17490 78 / 3e-15 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT3G03450 72 / 2e-13 GRAS RGL2 RGA-like 2 (.1) AT4G08250 71 / 5e-13 GRAS GRAS family transcription factor (.1) AT5G59450 69 / 3e-12 GRAS SCL11 GRAS family transcription factor (.1) AT2G29065 68 / 7e-12 GRAS family transcription factor (.1) AT1G63100 65 / 4e-11 GRAS GRAS family transcription factor (.1) AT1G66350 64 / 9e-11 GRAS RGL1 RGA-like 1 (.1) AT3G46600 64 / 9e-11 GRAS GRAS family transcription factor (.1.2.3) AT1G55580 62 / 2e-10 GRAS SCL18, LAS SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) AT5G41920 61 / 6e-10 GRAS GRAS family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002424 [exp] 715 / 0 AT5G17490 161 / 8e-43 RGA-like protein 3 (.1) Lus10001451 [exp] 547 / 0 AT5G17490 179 / 7e-51 RGA-like protein 3 (.1) Lus10016897 [exp] 160 / 2e-43 AT3G03450 189 / 5e-53 RGA-like 2 (.1) Lus10016893 [exp] 159 / 8e-43 AT3G03450 175 / 1e-47 RGA-like 2 (.1) Lus10037758 [exp] 158 / 2e-42 AT3G03450 186 / 6e-52 RGA-like 2 (.1) Lus10024252 [exp] 148 / 5e-39 AT3G03450 178 / 4e-49 RGA-like 2 (.1) Lus10016889 [exp] 147 / 1e-38 AT1G66350 162 / 7e-44 RGA-like 1 (.1) Lus10023621 [exp] 146 / 2e-38 AT3G03450 181 / 4e-50 RGA-like 2 (.1) Lus10037753 [exp] 145 / 3e-38 AT1G66350 156 / 8e-42 RGA-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G195600 [exp] 338 / 5e-111 AT3G03450 209 / 2e-60 RGA-like 2 (.1) Potri.014G120000 [exp] 321 / 1e-104 AT3G03450 174 / 1e-47 RGA-like 2 (.1) Potri.010G143700 [exp] 203 / 4e-59 AT1G66350 182 / 2e-50 RGA-like 1 (.1) Potri.010G143600 [exp] 192 / 3e-55 AT3G03450 205 / 7e-59 RGA-like 2 (.1) Potri.010G143500 [exp] 179 / 2e-50 AT3G03450 182 / 8e-51 RGA-like 2 (.1) Potri.010G143200 [exp] 168 / 5e-47 AT1G66350 198 / 8e-58 RGA-like 1 (.1) Potri.010G143400 [exp] 164 / 2e-45 AT1G66350 207 / 1e-60 RGA-like 1 (.1) Potri.001G326000 [exp] 78 / 4e-15 AT1G66350 296 / 2e-92 RGA-like 1 (.1) Potri.003G122400 [exp] 75 / 4e-14 AT1G63100 696 / 0.0 GRAS family transcription factor (.1) Potri.005G175300 [exp] 74 / 7e-14 AT4G08250 467 / 2e-161 GRAS family transcription factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10000140 pacid=23142317 polypeptide=Lus10000140 locus=Lus10000140.g ID=Lus10000140.BGIv1.0 annot-version=v1.0 ATGGTTCCAGTTGACAATCAAGATCACAGTGAAATCAATCGTCCAGGTGGTTGCCTGAATCAACAAGGGAAGAATATGTTTTCCATGGAGGAGTTGGGAC AGGTTTATCCACTAAAGCCAGCTGCCAGATCAACTGAATCGGTCACAAAAGGGCTACAGCTGTTCAACGACAAGTCTAGCAAGCTACGACCGCAATCTGA ACCTTCTTCCAACAACAACAAAGGTATGAGTTTCGAGGACTATCTGGTGTCTTGTTTCCCCGCACCAGCGGCCGCACAACCGATGCACGAAATCAAGCGG CTCGAGAACATTACCAACAACCGCAACACTAGTACTAGTACTAATAGTAATAACAACGGCAGCCTTTCGGCGTCGCTAGAGCTTCTCAATAGCTACGGGA GTGGGTTTAGGAAGCTGGTCAATAACAACAACAATACTATCAACAACCAATCGGCAAATATGTCGACCGCAGTGAAGCCGGGTGCGGAGGCCAATAAGTA CACTAGGAAGTTGTCAACGGAGGCAGTGATGAGGGTGGCGGGAGAGAGGTACATACAGTTTTCGGAGCAACATAGGTGCGACGATTTCTCCATGCTTATG CACCCTTTCGGCTACGCCCTATCAGCGGGGCTATCAGAGGAAGAGACTAAGGATGTGGAGTTGGCCCACCTCCTCCTTGCTGCCGCAGAGAAGGTGGGGT TCCACCAATATGACCGCGCCAGCAAATTGCTGACACGGTGTGAGTGGATCGCGTCAGATAGGTCCAACGCAGCCCAGAGGATCGTGCATTGCTTCGCAGA AGCTCTCCGAGAGAGGATCGATAGAGGGTTGGGGAAATTCATTGTCAGGATGCCGGATCCCTTCCCGTCCTTCAATTCCATGTACAATAATGGATCAGGT ACAAATCTGGCCTCCATTTGTCTACACCAAAAGGCGCCATTCAGTCAAGTGATGCAAATGACAACCGTACAATCCATCATTGAAAACATAGGAACATCAG CTAGAAAGCTTCATTGCATTGATCTGGAGATCAGGAGCGGAGTGATCTGGACAGCCTTGATGCAGGCTCTCGCGAACCGAGGTGCTGATTGCGTAATGGT CGAGCATCTCAGGGTCACGGCCATTGCCCGAATCTCGGAAAGATACCACGTGGAGGACACCGGGAGGCGGTTGGAGAGCTTTGCTAGGTCCATGAACTTC CCCTTCAGTTTCCACGTTGTATATATTAACACATGCCTCAGCGATATCAGAGAGGATGTGTTTCGGGTGGCTTTCGACGAAACTGTGGTTGTTGTGTGTA CCTTCATCCTCCGGACCCTCCTCGGACGACCAGAAAGATTAGAGGTCAAGTAA
AA sequence Show only first row Show all	>Lus10000140 pacid=23142317 polypeptide=Lus10000140 locus=Lus10000140.g ID=Lus10000140.BGIv1.0 annot-version=v1.0 MVPVDNQDHSEINRPGGCLNQQGKNMFSMEELGQVYPLKPAARSTESVTKGLQLFNDKSSKLRPQSEPSSNNNKGMSFEDYLVSCFPAPAAAQPMHEIKR LENITNNRNTSTSTNSNNNGSLSASLELLNSYGSGFRKLVNNNNNTINNQSANMSTAVKPGAEANKYTRKLSTEAVMRVAGERYIQFSEQHRCDDFSMLM HPFGYALSAGLSEEETKDVELAHLLLAAAEKVGFHQYDRASKLLTRCEWIASDRSNAAQRIVHCFAEALRERIDRGLGKFIVRMPDPFPSFNSMYNNGSG TNLASICLHQKAPFSQVMQMTTVQSIIENIGTSARKLHCIDLEIRSGVIWTALMQALANRGADCVMVEHLRVTAIARISERYHVEDTGRRLESFARSMNF PFSFHVVYINTCLSDIREDVFRVAFDETVVVVCTFILRTLLGRPERLEVK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17490	GRAS	AtRGL3, RGL3	RGA-like protein 3 (.1)		Lus10000140 [exp]	0	1
AT1G63060			unknown protein		Lus10000001 [exp]	11.8
AT5G26150			protein kinase family protein ...		Lus10000068 [exp]	97.2
AT5G35110			unknown protein		Lus10000078 [exp]	104.1
AT2G38540		ATLTP1, LP1	ARABIDOPSIS THALIANA LIPID TRA...		Lus10000082 [exp]	106.8
AT2G46490			unknown protein		Lus10000088 [exp]	110.6
AT4G09160			SEC14 cytosolic factor family ...		Lus10000102 [exp]	119.1
AT1G60780		HAP13	HAPLESS 13, Clathrin adaptor c...		Lus10000107 [exp]	122.0
					Lus10000109 [exp]	123.1
AT3G07565			Protein of unknown function (D...		Lus10000123 [exp]	130.8
					Lus10000134 [exp]	136.5

Compare expression of checked genes

Lus10000140 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.