Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61220 197 / 1e-62 SDR1 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G01800 197 / 3e-62 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G24190 188 / 9e-59 SDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT5G51030 92 / 6e-22 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G61830 91 / 2e-21 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G59710 80 / 2e-17 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040932 [exp] 355 / 7e-124 AT3G61220 327 / 3e-112 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10014690 [exp] 246 / 2e-81 AT3G61220 335 / 2e-115 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10014688 [exp] 241 / 2e-79 AT3G61220 348 / 8e-121 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10006894 [exp] 238 / 2e-78 AT3G61220 325 / 1e-111 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10006893 [exp] 233 / 2e-76 AT3G61220 313 / 4e-107 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10014689 [exp] 239 / 9e-76 AT3G61220 336 / 2e-112 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10014694 [exp] 213 / 2e-68 AT3G61220 369 / 4e-129 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10040933 [exp] 208 / 9e-67 AT3G61220 342 / 1e-118 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10014693 [exp] 199 / 5e-63 AT3G61220 347 / 3e-120 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G080100 [exp] 204 / 3e-65 AT3G61220 350 / 3e-121 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156800 [exp] 203 / 1e-64 AT3G61220 363 / 1e-126 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156300 [exp] 202 / 2e-64 AT3G61220 367 / 6e-128 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G157000 [exp] 200 / 2e-63 AT3G61220 406 / 9e-144 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156600 [exp] 197 / 2e-62 AT3G61220 348 / 7e-121 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G080000 [exp] 187 / 2e-58 AT3G61220 332 / 2e-114 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.004G235500 [exp] 156 / 3e-46 AT3G61220 313 / 7e-107 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.004G235600 [exp] 138 / 2e-39 AT3G61220 285 / 1e-95 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156866 [exp] 132 / 5e-38 AT1G01800 206 / 5e-67 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.009G158200 [exp] 125 / 6e-34 AT2G24190 283 / 1e-94 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10000242 pacid=23139344 polypeptide=Lus10000242 locus=Lus10000242.g ID=Lus10000242.BGIv1.0 annot-version=v1.0 ATGTATATAGAGTATTATTCGTTAGCGCTTAGGGGTTGCGGTGGTGACCGGAGGAAACAAAGGGATGGATTCGAGATATGCAAGCAATTGGCTTCCAACG GGATACTGGTGATCTTGACAGCCAGAGACGAAACCAGAGGCCAACAAGCTGTGAACAAGCTCAAACATGACTGTAATCATGACGTCATCTCTGATAACAT TATATTCCATCAACTTGAGGTGGCAGATAGTTCCAGCATCTCTTCTTTTACACATTTCATCACAACCCACTTTGCCAAACTCGACATCCAGGTTAATAAT GCTGGAATAATTGGTACCATTTGGCGCGAAGATGTGTTGAAATCTACACATCTTAATCAGCCTGATTGGCAAGACAAGATGAAGGAGGTTACCTTTGATA CTTATGACTTGACTGAAGAATGCTTGAAAACTAATTACTACGGTTCCAAAGGGATGATGGAAGCTTTCTTGCCATTGCTTCAGCTCTCTGATTCTCCCAG GATCGTCAATGTTTCTTCCATAACCTCAAGCTTGGCGAACATCAATAACGAATGGGCTAGAGGAGCGCTGAGTGATGCTGAAAATTTGTCCGAGGGAAGA ATCGAACACGTGATTCAACATTTCTTGAAAGACTTCAAGGAAGGTTTGCTGAAAACTACCGGGTGGCCGTTCTTCACACCCGGTAGTTTCCAGACTGAAT GCATACACAAGGATCATAGCTAA
AA sequence Show only first row Show all	>Lus10000242 pacid=23139344 polypeptide=Lus10000242 locus=Lus10000242.g ID=Lus10000242.BGIv1.0 annot-version=v1.0 MYIEYYSLALRGCGGDRRKQRDGFEICKQLASNGILVILTARDETRGQQAVNKLKHDCNHDVISDNIIFHQLEVADSSSISSFTHFITTHFAKLDIQVNN AGIIGTIWREDVLKSTHLNQPDWQDKMKEVTFDTYDLTEECLKTNYYGSKGMMEAFLPLLQLSDSPRIVNVSSITSSLANINNEWARGALSDAENLSEGR IEHVIQHFLKDFKEGLLKTTGWPFFTPGSFQTECIHKDHS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10000242 [exp]	0	1
AT1G60690			NAD(P)-linked oxidoreductase s...		Lus10006105 [exp]	4.6	0.9692
AT1G17170		ATGSTU24	Arabidopsis thaliana Glutathio...		Lus10030362 [exp]	8.5	0.9465
AT3G58480			calmodulin-binding family prot...		Lus10013759 [exp]	9.6	0.9518
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10031388 [exp]	11.0	0.9636
AT1G65820			microsomal glutathione s-trans...		Lus10007375 [exp]	11.5	0.9473
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10035258 [exp]	14.4	0.9482
AT1G16670			Protein kinase superfamily pro...		Lus10023510 [exp]	16.0	0.9382
AT2G18210			unknown protein		Lus10028324 [exp]	18.3	0.9489
AT3G49180		RID3	ROOT INITIATION DEFECTIVE 3, T...		Lus10025732 [exp]	19.0	0.9448
AT5G52430			hydroxyproline-rich glycoprote...		Lus10024642 [exp]	20.6	0.9476

Compare expression of checked genes

Lus10000242 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.