Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51630 217 / 1e-57 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3) AT5G36930 177 / 4e-45 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G69550 169 / 2e-42 disease resistance protein (TIR-NBS-LRR class) (.1) AT5G17680 154 / 7e-38 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G27170 153 / 2e-37 transmembrane receptors;ATP binding (.1.2) AT1G72920 138 / 4e-36 Toll-Interleukin-Resistance (TIR) domain family protein (.1) AT2G16870 148 / 5e-36 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G72950 140 / 8e-36 Disease resistance protein (TIR-NBS class) (.1) AT5G11250 144 / 1e-34 Disease resistance protein (TIR-NBS-LRR class) (.1) AT1G72940 135 / 3e-34 Toll-Interleukin-Resistance (TIR) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000738 [exp] 730 / 0 AT5G36930 191 / 7e-50 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007790 [exp] 726 / 0 AT5G36930 343 / 4e-99 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10008519 [exp] 721 / 0 AT1G27180 344 / 2e-98 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10008526 [exp] 699 / 0 AT5G36930 361 / 5e-106 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10004719 [exp] 667 / 0 AT5G36930 384 / 3e-113 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007811 [exp] 654 / 0 AT5G36930 376 / 1e-110 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007810 [exp] 612 / 0 AT5G36930 242 / 1e-65 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10002247 [exp] 579 / 0 AT5G36930 363 / 1e-108 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10002249 [exp] 573 / 0 AT5G36930 286 / 2e-80 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G004599 [exp] 210 / 2e-55 AT5G36930 627 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.012G053200 [exp] 192 / 1e-49 AT1G27170 1187 / 0.0 transmembrane receptors;ATP binding (.1.2) Potri.019G001602 [exp] 191 / 2e-49 AT5G36930 778 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.001G066500 [exp] 189 / 2e-49 AT5G36930 462 / 2e-146 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G001600 [exp] 191 / 3e-49 AT5G36930 721 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002066 [exp] 190 / 5e-49 AT5G36930 631 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.002G056100 [exp] 188 / 2e-48 AT5G36930 591 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002568 [exp] 179 / 6e-48 AT5G36930 439 / 2e-142 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G007884 [exp] 186 / 7e-48 AT5G36930 654 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G069500 [exp] 186 / 1e-47 AT5G17680 711 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10000331 pacid=23159277 polypeptide=Lus10000331 locus=Lus10000331.g ID=Lus10000331.BGIv1.0 annot-version=v1.0 ATGAGTTACATAAGAGAAGCTGTGGCCGTGGCTGCAGTGGTTCTCCCATTGATTCTTCTCTACAAGTTGTTGTATGGAAGGCGAAGTTTCGAGGACTTGA TCGCCGACGATGATAACGAATATACCATTCAGCTAACAGATTCAACATCTTTAGTTGATGAATCTTCCGGCACCTCCGATTTTAAGGATCCCCCCATCGA GTTAACTGATTCGACATTCGTAGCTGACGAAACATCCAACTCACCAATTCCCTCTATTTCGTTCCCCTCTGTAGAGTACGAGGTTTTCTTGAGTTTCAGG GGTCCGGATACTCGTCATCAGATCACCGACATCCTGTATCGGTTTCTTTGTCGCACAAAGATTCACACATTTAAGGACGACAATGAGCTTCGCAAGGGAG AAGAAATCGGGCTCAACCTCCTCACTGCAATCGATCAATCCAAGATTTATGTCCCGATCATATCGAGGAATTACGCCCATAGTAAATGGTGTTTAATAGA ACTTGCTGAAATCATTCAACGTCAGGAGCAGGACCCTCGACGCATTATACTTCCAATTTTTTATATGGTCGATCCAAGAGATGTACGACATCAAACTGGA CCTTATCAAAATGCATTTCAAGAACACGCCGCCAAATTTGATGAAAATACCTTACAAAGTTGGAAGGATGCTCTAAATAAGGTTGGATCGTTAAAAGGAT GGCATGTCGAAAGTAATGACAAGCAGGGAGCTATAGCAGATGAAGTTTCTGCAGATATATGGTCACTTCTGAGTAAAGAAAATTTTACTTTAGCAATTGA TGAGTTAGTTGGAATTGATGATCTTGTCGAAGCGGTATTAGAAAAATTGAGTCTAGACTCTAAAAGTCTGACAATGGTCGGCCTTCACGGCATGGGTGGA ATAGATTTTGCTTCTCAGAGTAGATTCATCATTACTTCAAGAAATGAGAAAGTCTTAAGTACTTTGAATGAGAATAAATGCAAGTTGTATGAAGTTGGAT CGATGAGTCAATCACGCTCACTAGAACTCTTCTCGAAACATGCATTCAAAAATAGTTCACCTCCACCAGATTATCAGACTCTGGCGAAGGACATTGTATC GACTACCGGAGGGCTTCCATTAACTCTAAAGGTTATAGGTTCGCTTTTGTTCAGAGAAGAGATTGCGGTTTGGAAAGACAAATTGGAACAATTACATGAA ACTCTAAAGCTTGATGAGGTTCTGGACAGGCTAAAGATAAGTTATGAAGCATTAGATTACGAAGCACAACAGATTTTCTTGGATATAGCTTGTTTTTTCA CCGGAAAAAACAAAGAAATGCCATCTTATATATGGAGTGACTGTAAATTCTATCCTGCAAGTAATATTAGTATTCTCTTTCAAAGATTTATGATAAAAGT TGGAGATAATGGTGAGTTTAAAATGCATGACCAACTCAGAGATATGGGTAGAGAAATTGTCAGACGGGAAGATATAGAGCGTCCGTGGATGAGAAGTAGA ATATGGTCCGCTGAAGAAGGAAGGGAGCTCTTATCTAATAAAAAGGTATCGAGTCAAATTAAAGCACTTCGAGTCGAAGGATTAGAGATCGGCGCGGATG AGCTTAGAAGCAAATGTTTGATGCATTTGTCAGAGTTGAGATATTTTGAGGCAGAATCATCGACAATACTTACCGGAGATTTCGAAAATATCCTCCCGAA TTTAAGGTGGCTTCAGTTGCGCGACTATTGGCAATGGTATCCGTCGACGTCGGCCTTAACCAATTTTAATATGAAAAATTTGGTGATCTTCTATCTTTAC AGAAGCAATGTAAATGAAAATTGGGGAGGCTGGAGCCAATTCAAGATGGCACAACGTCTAAAAGTTATGGATCTTTCCTACTGTTCTGAGCTTACAAGAC TCCCCTACTTGCCCAAAAGTCTAGAGATATTCAGGCTAAGTCACAACAAAGAACACGAGATTCCGGAACTGGATATTGGAGAGTTGAAGAATCTAAAGGT GTTGCAACTCAGATCCACCGCTATAAGAAAAATAAGCGGAGGAACTTTTGGTATGTTGAAAGGACTGCAGGAGCTTGATCTCTGTCACTTGAAGTGTGAG AACTTGAGAGAGATTATCAGGGATGTTGGCGAATTGTCGTCATCTCTTATATTCTTGAACACGCAGGGAGCTATTGAGGTGGACTATAAGACACCTACAG GTTTAAAGAAGTTGTACACTTCATCCCGGATTTCGAATCTCGCAGACATGTTAGAGTTGGAGGTATTGAAAGTTGAGGGTTGTGAGCATGGGCTCAACAT CCCTCCTCTATGGTGGAAGGTATCCAAGTTGAAGATTCTATCGCTCACACAGACAAAGATGTACGACACCGGTAGTAACAACACGACATCAACTATGTTA CCATCGTCGCTAGCGTCTCTCCAAATCACCCATTGTCATGTGTGGCTCCCAAGTCTAGTGAATCTCAGGAACTTGACTCGTATAGAGATGCGCACGTGTC GAGCTCTTTGTAACCATATGGACGGGTTGGAAGGGTTGAAATCACTGCAATCGCTTCTAATCTGCAGAGTAAAGGGTTTAACCCGGATCACCGGCCTTAT CGATCTGTTGTATTCGCCTAACTGTAAGTTGGAGGAGCTACGCATCGTCTTTTGCCCTGACCTTGCTGAGCTACAACCAGTCAATGACCTTGTTGAGCTC CAACCAATCAACTCTTTACATTCCCTGACAATAGGTTACTGTCGGCAGCTGGAGGCTGGTCCGTTGATACGAGGTTTATTGAATTTCTCAATGCTCAATT CCTTGGTTCTCGTGAAGGTGAACATCAATACCGGGGATGATATTCATCAGTTTGAGGGGCTTGGATCCCTTGAAGAGTTAGAGCAGTTGTTTCTGTGGAA TGTGCTGCCACCTTCCTTGGAGAGAATACCTTCATTGTCAAGGTTGCAAAAACTGAGAATGTTGACAATAGTGGGTGCTCCGAGTTTGCGGGAGATCCAA GGACTTGGAGAGTTGAAGTCTTTAGAAGATCTTAATCTGCCTATCTGCCCTTCGTTGGAGAGATTATGGCCCGCGGATTATCAACCATCATTCCCTAGCC TGAAGAGACTCGACATCCGGAACTCCAAAAGCTTGAGTGTTGAACATCTCTCTACTCTCAAGACCAGTCTACCCAATGTGGAAATCCGGTGGCCCGATGA GCCCATCGACGAAGTTGAAGACTATGAAACAACAGGCGACGTGGATGATGAGTGA
AA sequence Show only first row Show all	>Lus10000331 pacid=23159277 polypeptide=Lus10000331 locus=Lus10000331.g ID=Lus10000331.BGIv1.0 annot-version=v1.0 MSYIREAVAVAAVVLPLILLYKLLYGRRSFEDLIADDDNEYTIQLTDSTSLVDESSGTSDFKDPPIELTDSTFVADETSNSPIPSISFPSVEYEVFLSFR GPDTRHQITDILYRFLCRTKIHTFKDDNELRKGEEIGLNLLTAIDQSKIYVPIISRNYAHSKWCLIELAEIIQRQEQDPRRIILPIFYMVDPRDVRHQTG PYQNAFQEHAAKFDENTLQSWKDALNKVGSLKGWHVESNDKQGAIADEVSADIWSLLSKENFTLAIDELVGIDDLVEAVLEKLSLDSKSLTMVGLHGMGG IDFASQSRFIITSRNEKVLSTLNENKCKLYEVGSMSQSRSLELFSKHAFKNSSPPPDYQTLAKDIVSTTGGLPLTLKVIGSLLFREEIAVWKDKLEQLHE TLKLDEVLDRLKISYEALDYEAQQIFLDIACFFTGKNKEMPSYIWSDCKFYPASNISILFQRFMIKVGDNGEFKMHDQLRDMGREIVRREDIERPWMRSR IWSAEEGRELLSNKKVSSQIKALRVEGLEIGADELRSKCLMHLSELRYFEAESSTILTGDFENILPNLRWLQLRDYWQWYPSTSALTNFNMKNLVIFYLY RSNVNENWGGWSQFKMAQRLKVMDLSYCSELTRLPYLPKSLEIFRLSHNKEHEIPELDIGELKNLKVLQLRSTAIRKISGGTFGMLKGLQELDLCHLKCE NLREIIRDVGELSSSLIFLNTQGAIEVDYKTPTGLKKLYTSSRISNLADMLELEVLKVEGCEHGLNIPPLWWKVSKLKILSLTQTKMYDTGSNNTTSTML PSSLASLQITHCHVWLPSLVNLRNLTRIEMRTCRALCNHMDGLEGLKSLQSLLICRVKGLTRITGLIDLLYSPNCKLEELRIVFCPDLAELQPVNDLVEL QPINSLHSLTIGYCRQLEAGPLIRGLLNFSMLNSLVLVKVNINTGDDIHQFEGLGSLEELEQLFLWNVLPPSLERIPSLSRLQKLRMLTIVGAPSLREIQ GLGELKSLEDLNLPICPSLERLWPADYQPSFPSLKRLDIRNSKSLSVEHLSTLKTSLPNVEIRWPDEPIDEVEDYETTGDVDDE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36930			Disease resistance protein (TI...		Lus10000331 [exp]	0	1
AT5G36930			Disease resistance protein (TI...		Lus10007790 [exp]	2.0	0.9611
AT5G36930			Disease resistance protein (TI...		Lus10008526 [exp]	2.0	0.9565
AT5G40100			Disease resistance protein (TI...		Lus10000329 [exp]	2.8	0.9478
AT5G36930			Disease resistance protein (TI...		Lus10027184 [exp]	3.9	0.9446
AT1G23820		SPDS1	spermidine synthase 1 (.1.2)		Lus10029169 [exp]	4.4	0.9183
AT3G15800			Glycosyl hydrolase superfamily...		Lus10011482 [exp]	4.9	0.9407
AT1G75260			oxidoreductases, acting on NAD...		Lus10001963 [exp]	5.5	0.9479
AT5G36930			Disease resistance protein (TI...		Lus10007811 [exp]	6.3	0.9383
AT5G41470			Nuclear transport factor 2 (NT...		Lus10032294 [exp]	7.3	0.9436
AT3G08510		ATPLC2	phospholipase C 2 (.1.2.3)		Lus10036182 [exp]	7.3	0.8991

Compare expression of checked genes

Lus10000331 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.