Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64640 168 / 5e-52 AtENODL8 early nodulin-like protein 8 (.1) AT1G64650 150 / 2e-42 Major facilitator superfamily protein (.1.2) AT4G27720 139 / 7e-38 Major facilitator superfamily protein (.1) AT3G49310 132 / 2e-35 Major facilitator superfamily protein (.1) AT1G79800 86 / 2e-20 AtENODL7 early nodulin-like protein 7 (.1) AT5G53870 87 / 2e-19 AtENODL1 early nodulin-like protein 1 (.1) AT1G48940 82 / 7e-19 AtENODL6 early nodulin-like protein 6 (.1) AT3G20570 82 / 8e-19 AtENODL9 early nodulin-like protein 9 (.1) AT4G28365 81 / 4e-18 AtENODL3 early nodulin-like protein 3 (.1) AT4G31840 80 / 6e-18 AtENODL15 early nodulin-like protein 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033227 [exp] 304 / 4e-105 AT1G64640 169 / 1e-53 early nodulin-like protein 8 (.1) Lus10033228 [exp] 161 / 3e-46 AT1G64650 835 / 0.0 Major facilitator superfamily protein (.1.2) Lus10003219 [exp] 148 / 3e-41 AT1G64650 821 / 0.0 Major facilitator superfamily protein (.1.2) Lus10017322 [exp] 147 / 1e-40 AT1G64650 799 / 0.0 Major facilitator superfamily protein (.1.2) Lus10043063 [exp] 86 / 4e-20 AT3G20570 153 / 4e-47 early nodulin-like protein 9 (.1) Lus10022318 [exp] 84 / 2e-19 AT3G18590 146 / 4e-45 early nodulin-like protein 5 (.1) Lus10011158 [exp] 84 / 3e-19 AT3G20570 149 / 2e-45 early nodulin-like protein 9 (.1) Lus10032111 [exp] 82 / 5e-19 AT5G14345 147 / 1e-45 early nodulin-like protein 21 (.1) Lus10014880 [exp] 80 / 5e-18 AT3G18590 144 / 1e-43 early nodulin-like protein 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G085100 [exp] 214 / 8e-70 AT1G64640 150 / 3e-46 early nodulin-like protein 8 (.1) Potri.003G145600 [exp] 149 / 1e-41 AT1G64650 831 / 0.0 Major facilitator superfamily protein (.1.2) Potri.015G008100 [exp] 145 / 2e-40 AT4G27720 827 / 0.0 Major facilitator superfamily protein (.1) Potri.012G020500 [exp] 133 / 9e-36 AT4G27720 761 / 0.0 Major facilitator superfamily protein (.1) Potri.011G135400 [exp] 97 / 5e-24 AT3G20570 138 / 4e-41 early nodulin-like protein 9 (.1) Potri.001G338800 [exp] 89 / 2e-21 AT5G14345 145 / 6e-45 early nodulin-like protein 21 (.1) Potri.006G264600 [exp] 87 / 1e-20 AT2G25060 184 / 9e-60 early nodulin-like protein 14 (.1) Potri.018G018200 [exp] 86 / 3e-20 AT2G25060 177 / 7e-57 early nodulin-like protein 14 (.1) Potri.015G052000 [exp] 84 / 1e-19 AT1G48940 163 / 1e-51 early nodulin-like protein 6 (.1) Potri.003G050500 [exp] 83 / 3e-19 AT1G79800 162 / 1e-50 early nodulin-like protein 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF02298 [flax] [poplar] Cu_bind_like Plastocyanin-like domain CL0015 [flax] [poplar] MFS PF05631 [flax] [poplar] MFS_5 Sugar-tranasporters, 12 TM
Representative CDS sequence Show only first row Show all	>Lus10000336 pacid=23163524 polypeptide=Lus10000336 locus=Lus10000336.g ID=Lus10000336.BGIv1.0 annot-version=v1.0 ATGCAGATAGTATTTTTAGTCTCTGCAGCTGCCCTTCTGCTTCCTGTTGTAACAAGTTTCCTGGTTGTACCTACTGGAGTCAAAGGTGGGCCAATCTCTT TCTCTGGGTGCATCCAGCTTCTTGGCTTCTGTGCTTTTGAGAGTTGCGTGGGTATATTCTGGCCTTCAATCATGAAAATGAGATCACAATTCATCCCAGA GGAGGCTAGGAGCACCATCATGAACTTCTTCCGCATTCCTCTTAATATTTTCGTATGCGTCGTGTTGTACAATGCTCTTCTACATGGTCTTGTTCCGATC AGCATGGACTTTGGCATGTCAAGTGAGTGGTATGTCTCCTGCTACCAGTACAAGGTTGGAGATTTAGACGCTTGGGGGATCCCCACTGACTCAAACCCCA AAGTCTACATCTATTGGTCCAAATATCACAACTTAACTGTTGGAGATTCCCTCTTGTTCCTGTACCCACCAAGCCAAGACTCAGTGATCCAAGTAACCCC ACAGAACTTCGACTCGTGCAACCTGAAAAACCCAATCTTGTACATGAACAATGGCAACTCCTTGTTCAACATCACCCAAGAAGGTGTGTTTTACTTCACC AGTGGGGAGCCAGGACACTGCGAGAAGAAGCAGAAGATTCGGATAACTGTAGGGAATGAATCTGCAACTGCTTATCCTCCTTCTTATGGCCCTGGTGGAG CATTGGCTGATTCTGCTCCCACTTCTCCAATTGCATTTGGATCCATCCCCACTTCTTCTACTTATTCATTGGAACCCAGATTCTCTGTCCTCTTATCAGT TGTTATTGGATCGCTGGTCTCTGGATTCATGTGA
AA sequence Show only first row Show all	>Lus10000336 pacid=23163524 polypeptide=Lus10000336 locus=Lus10000336.g ID=Lus10000336.BGIv1.0 annot-version=v1.0 MQIVFLVSAAALLLPVVTSFLVVPTGVKGGPISFSGCIQLLGFCAFESCVGIFWPSIMKMRSQFIPEEARSTIMNFFRIPLNIFVCVVLYNALLHGLVPI SMDFGMSSEWYVSCYQYKVGDLDAWGIPTDSNPKVYIYWSKYHNLTVGDSLLFLYPPSQDSVIQVTPQNFDSCNLKNPILYMNNGNSLFNITQEGVFYFT SGEPGHCEKKQKIRITVGNESATAYPPSYGPGGALADSAPTSPIAFGSIPTSSTYSLEPRFSVLLSVVIGSLVSGFM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64650			Major facilitator superfamily ...		Lus10000336 [exp]	0	1
AT1G64640		AtENODL8	early nodulin-like protein 8 (...		Lus10033227 [exp]	1.0	0.9914
AT5G20950			Glycosyl hydrolase family prot...		Lus10043457 [exp]	2.4	0.9852
					Lus10024349 [exp]	2.8	0.9817
AT1G72160			Sec14p-like phosphatidylinosit...		Lus10009453 [exp]	2.8	0.9705
AT2G03350			Protein of unknown function, D...		Lus10036804 [exp]	3.0	0.9841
AT3G16850			Pectin lyase-like superfamily ...		Lus10016837 [exp]	5.2	0.9661
AT5G11420			Protein of unknown function, D...		Lus10025753 [exp]	5.5	0.9807
AT3G24530			AAA-type ATPase family protein...		Lus10043218 [exp]	5.5	0.9563
AT1G76240			Arabidopsis protein of unknown...		Lus10016005 [exp]	5.7	0.9647
AT3G61640		AGP20, ATAGP20	arabinogalactan protein 20 (.1...		Lus10033939 [exp]	6.5	0.9722

Compare expression of checked genes

Lus10000336 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.