Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09460 297 / 6e-102 MYB ATMYB6, ATMYB8 myb domain protein 6 (.1) AT1G22640 266 / 1e-89 MYB AtMYB3 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) AT1G35515 264 / 2e-89 MYB MYB8, HOS10 high response to osmotic stress 10 (.1) AT4G38620 265 / 2e-88 MYB AtMYB4 myb domain protein 4 (.1) AT2G16720 253 / 6e-84 MYB AtY49, AtMYB7 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) AT4G34990 249 / 1e-82 MYB ATMYB32 myb domain protein 32 (.1) AT3G02940 215 / 1e-68 MYB ATMYB107 myb domain protein 107 (.1) AT5G16770 215 / 2e-68 MYB ATMYB9 myb domain protein 9 (.1.2) AT4G28110 209 / 1e-66 MYB ATMYB41 myb domain protein 41 (.1) AT4G22680 208 / 2e-66 MYB ATMYB85 myb domain protein 85 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016948 [exp] 512 / 0 AT4G09460 301 / 1e-103 myb domain protein 6 (.1) Lus10009448 [exp] 354 / 6e-124 AT4G09460 290 / 2e-99 myb domain protein 6 (.1) Lus10001548 [exp] 353 / 3e-123 AT4G09460 291 / 2e-99 myb domain protein 6 (.1) Lus10014129 [exp] 260 / 2e-81 AT4G38620 284 / 5e-90 myb domain protein 4 (.1) Lus10033473 [exp] 243 / 9e-81 AT2G16720 249 / 2e-83 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Lus10028435 [exp] 239 / 3e-79 AT2G16720 246 / 2e-82 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Lus10041888 [exp] 237 / 2e-78 AT4G38620 245 / 5e-82 myb domain protein 4 (.1) Lus10018418 [exp] 212 / 5e-67 AT4G21440 334 / 5e-114 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10002593 [exp] 207 / 1e-65 AT4G21440 330 / 2e-112 A. THALIANA MYB 4, MYB-like 102 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G109300 [exp] 308 / 3e-105 AT4G09460 262 / 9e-88 myb domain protein 6 (.1) Potri.019G081500 [exp] 299 / 8e-102 AT1G22640 277 / 1e-93 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) Potri.004G174400 [exp] 266 / 2e-89 AT4G38620 305 / 2e-104 myb domain protein 4 (.1) Potri.009G134000 [exp] 263 / 7e-88 AT4G38620 305 / 2e-104 myb domain protein 4 (.1) Potri.005G112000 [exp] 259 / 7e-87 AT4G38620 277 / 5e-94 myb domain protein 4 (.1) Potri.T011400 [exp] 260 / 4e-86 AT4G38620 257 / 5e-85 myb domain protein 4 (.1) Potri.T011525 [exp] 260 / 4e-86 AT4G38620 257 / 5e-85 myb domain protein 4 (.1) Potri.004G138000 [exp] 258 / 1e-85 AT4G38620 257 / 8e-85 myb domain protein 4 (.1) Potri.010G114000 [exp] 230 / 8e-76 AT4G38620 243 / 6e-81 myb domain protein 4 (.1) Potri.004G088100 [exp] 220 / 2e-71 AT4G09460 227 / 5e-75 myb domain protein 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10000411 pacid=23163935 polypeptide=Lus10000411 locus=Lus10000411.g ID=Lus10000411.BGIv1.0 annot-version=v1.0 ATGGGAAGGTCTCCTTGTTGTGAGAAGGCTCATACCAACAAAGGCGCTTGGACCAAAGAAGAAGACCAGCGTCTCATCGATTACATCCGCGCTCATGGCG AAGGTTGCTGGCGCTCCCTCCCTAAATCTGCTGGGTTGCTTAGATGTGGAAAGAGTTGCAGACTTCGATGGATAAATTACCTGAGGCCTGATCTCAAAAG GGGAAATTTCACCGATGAAGAGGATCAACTCATCATTAAGCTCCACAACTTGCTCGGAAACAAATGGTCGTTGATTGCCGGAAGATTGCCCGGAAGAACA GACAACGAGATCAAGAACTACTGGAATACCCACATCAAGAGAAAACTGTTGAGCCACGGGATTGACCCGCAGACCCACCGTCCCCTGAACGAGAAACCAA CCGGAGCCGTCAACGCCACCACCGTTGCTCCTCCGGCGAAGCCAGCCCAGTTGGATTTCAAAACCAACAACGGAATCCCGGATTTCGAATTCCAAACCGT GAAAGCAGAGTCCGTCGAAGAAAACAACTGCTCAAGCAGCGGCATGACGACCGACGAAGAACTGCCGCAGAGGCCCACCGCAACAGCGGCAGGGAATCGA AGCCAACGAGATGAATTGAATTTGGAACTAACAATTGGGATTTCTCCTTATCCGCAGCCGAGTTCTGCTTCTTCTGGCAACTCGGCCGAGTCGAAGCTTG ATCAGTTTGGGCCAATAACTCAGTTTTCCGGTGCGGCGAAGGATGTTTGCGTGTGTTGGCAGCTGGGTTTTTCAGGGAAGTGCCGTTGCCAATATTCCGG TGCCGGTGAGCGGCAAAGTAGATTTCAACATTCATAA
AA sequence Show only first row Show all	>Lus10000411 pacid=23163935 polypeptide=Lus10000411 locus=Lus10000411.g ID=Lus10000411.BGIv1.0 annot-version=v1.0 MGRSPCCEKAHTNKGAWTKEEDQRLIDYIRAHGEGCWRSLPKSAGLLRCGKSCRLRWINYLRPDLKRGNFTDEEDQLIIKLHNLLGNKWSLIAGRLPGRT DNEIKNYWNTHIKRKLLSHGIDPQTHRPLNEKPTGAVNATTVAPPAKPAQLDFKTNNGIPDFEFQTVKAESVEENNCSSSGMTTDEELPQRPTATAAGNR SQRDELNLELTIGISPYPQPSSASSGNSAESKLDQFGPITQFSGAAKDVCVCWQLGFSGKCRCQYSGAGERQSRFQHS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G09460	MYB	ATMYB6, ATMYB8	myb domain protein 6 (.1)		Lus10000411 [exp]	0	1
AT4G39780	AP2_ERF		Integrase-type DNA-binding sup...		Lus10019665 [exp]	3.3	0.9574
AT2G24240			BTB/POZ domain with WD40/YVTN ...		Lus10036274 [exp]	8.4	0.9424
AT2G14095			unknown protein		Lus10012704 [exp]	9.2	0.9339
AT1G12110		CHL1-1, CHL1, B...	CHLORINA 1, ARABIDOPSIS THALIA...		Lus10024614 [exp]	10.6	0.9393
AT2G01275			RING/FYVE/PHD zinc finger supe...		Lus10035271 [exp]	11.8	0.9295
AT5G65495			unknown protein		Lus10012729 [exp]	13.6	0.9365
AT5G66590			CAP (Cysteine-rich secretory p...		Lus10016787 [exp]	14.7	0.9147
AT5G18350			Disease resistance protein (TI...		Lus10018024 [exp]	18.9	0.9242
AT3G16990			Haem oxygenase-like, multi-hel...		Lus10037751 [exp]	21.9	0.9396
AT3G50770		CML41	calmodulin-like 41 (.1)		Lus10032734 [exp]	22.0	0.9053

Compare expression of checked genes

Lus10000411 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.