Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 328 / 1e-92 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27170 322 / 7e-90 transmembrane receptors;ATP binding (.1.2) AT1G27180 320 / 7e-89 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G17680 286 / 9e-79 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G48770 277 / 4e-76 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G18360 268 / 1e-74 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G12010 271 / 6e-74 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT2G16870 264 / 4e-72 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G19510 259 / 1e-70 Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT4G11170 259 / 1e-70 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040576 [exp] 1562 / 0 AT1G27180 355 / 3e-103 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10012311 [exp] 1389 / 0 AT5G36930 354 / 6e-103 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10004747 [exp] 1105 / 0 AT5G36930 342 / 3e-99 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10033953 [exp] 1088 / 0 AT5G36930 347 / 2e-102 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007829 [exp] 1044 / 0 AT5G36930 330 / 2e-94 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007821 [exp] 1035 / 0 AT5G36930 339 / 4e-98 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007823 [exp] 976 / 0 AT1G27170 322 / 3e-92 transmembrane receptors;ATP binding (.1.2) Lus10007825 [exp] 960 / 0 AT5G36930 318 / 2e-89 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007831 [exp] 932 / 0 AT1G27180 332 / 7e-96 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T002200 [exp] 402 / 2e-120 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002400 [exp] 397 / 7e-119 AT5G36930 658 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G021681 [exp] 398 / 3e-117 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001933 [exp] 398 / 6e-117 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G052000 [exp] 398 / 7e-117 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001500 [exp] 396 / 1e-116 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G019710 [exp] 377 / 3e-116 AT5G36930 445 / 2e-144 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G017082 [exp] 392 / 5e-116 AT5G36930 638 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G046000 [exp] 380 / 5e-116 AT5G36930 496 / 1e-162 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G001602 [exp] 393 / 6e-116 AT5G36930 778 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10000423 pacid=23142582 polypeptide=Lus10000423 locus=Lus10000423.g ID=Lus10000423.BGIv1.0 annot-version=v1.0 ATGGTGCTTCGGTGGTCTGGACACGATGGGTCACAATTAGTGTCACTTAGCGAAGCTGTTACTGCAGTCCGAGTCAGGGTGGAATGTGGACTTCAACCCG AAGCTTTCATGTATGAGAGAAATTTATGGACCAAAGTTAAGGAGAAGAACTCAAAGGGAGGACAGCCAAAGGACGACTTGAGTGGATGGGGGGAATGGTT GGAGACTTTGGTGACAGAAATATGCTGTCTTTGTATCAAAAGAAACTTGGTGGATCGGACGATCGAATTGCCCTGGGATTCTGCTGAGGAGAAGTATCTT TCTAAGTGTCTTCTTGACTCTGCGGTTCACGATCCTTCCTCGACGACTGGAAGTCTTCTGGCAGTATACTATTTCAGGGGAAATTCCAAACAGCTGCTAT CGCCTATCGAACAGAGTCTACACAAGGACGAATCGTATGGTTTTGATGATCCCATGGACCTAGGATGGAGAATGCCCATAGAAGACCTAACCAAGTTGAA GAAGTTAACATTGTCTGTCCTTCTACTTTTACGAGAGATTGTGGAACTCGGCACACTGAAGTCACTAAAAAAGTTAGAAGTGAGGGGTTGCATTTCGTTG GAAAGAATGCCCGTCCAGGGTCTAGTGTCGGATCTACGGGAAAGAATGCCCGTCATCGATAGTATGGACTACTTAGATGTGTCATCTATAAAGTTGGACT TGAGAGGATGCACAAAGTTCACAAACCTGGATTCTGATCTTTCTCCCCTCGCCACCGAAGGAGCAGATCTAAGAGGAGTTGAGTTAATCATCAACTGGCC AGACGAACCAGGAACAGATATTCCTCCCGCCGCTTTCCTTTGGAGGGACATCATGTTGTCAGAGGATGCAGAGGACTCTAACTCTGAAATACTCTCCATA TTCTCCAAACAGCATAGCTCACAAACAGCAAAATCCGACCGACAAGATCACCAGGAACCAACGATTCAGTCGGAGGGTGCAGTAGAAATGTATTTCTTAG TAGGAGCTGCGATAGTTGCTCTGTTTATTGCTCTCTTTAAGCTTTTTCTGGGAAGGAGGAGGAAGACGGTAAATTCTGATGATTCGAATAATGATACTCT TCAACAATCGGATTCCGCTTCTACTTTTGGGGATTCTGGTTCGGTGCCCCTTCCCATCGGGGAGTACGAGGTGTTTTTGAACTTTAGAGGTCCGGATACA CGCGATAACATTACGAATATTCTTTACCGTTTTCTCGTTCTCTCGAAAATCCGCACGTTCAGAGACGATGATGAACTCCGTAAGGGAGAAGGAATATGGC CCAGCCTTGTCAAAGCCATCGGTCAGTCGAAGATTTCAGTTCCTATCTTCTCGCCTCGGTATGCCGAAAGTAAGTGGTGTCTGAAAGAACTGGCTGCGGT TGTAGAGCATCAAAAGCGAGAGAAAGGTCATGTCATACTTCCCATTTTTTATAAGATTGATCCTAGAGACGTACGCCATCAAACTGGACCTTACAAAACG GCTTTTCAACAACATAAACGGTCGAATAAATTTGATGAGGATACTATACAAAGTTGGAAAGTAGCTTTGAATGAGGTTGGATCCTTGAAAGGGTGGCACA TCAAAACCGAAAAAGAGGCTGTAGATGTTGCCGATGTTATTTCTGGGGTTGTATGGTCACATCTAATCAAGAATAACAGTACATTAGAGATCGATGAGTT GGTTGGAATCGATGATCATATGAAACAAGTAGTAGATATGCTAGATCTAGGCGCTAAAGGTGTGAATCTAATTGGTATTCATGGTATGGGTGGTATTGGG AAAACCACTCTTGCAACAGCGGTCTATAACAAAGTATCTACCTGCTTTGATCGCTATAGTTTTGTGAAAGATATACGAGAAACACAAAAACAAACAAAAG ATGTTCTCGTCTTACAAAAGAAGTTACTTTCTGATATCTTAAGTATGGAATCAGTTGGACCAAAAGCAAAGGAAATCATACGGGAGAGGGTTACTCAGTT CAAGATTCTTGTGGTTCTCGATGATGTAGACGAAAAGTTCAACTTCGAAGAAGTCTTGGGAAATTCGAAAAGTTTTGCTCCAGGAAGTTGTTTTATCATC ACGTCGAGAGATATAAAGGTCTTGGAAAGGTTAACCGGAGATAAAAGCAAGTTGTACGAAGTTAAAAAAATGGATGATAGTCATTCGCTTCAATTATTTT ACAAGCATGCGTTCAGAGAGGATCCCGTGTCGTCAGATTTAGATGATTTATCAAAAAGCATTGTATCTAAAGCAGGAGGACTTCCATTGGCGCTTAAGGT TATAGGGTCTCTTCTTTGGCGAGAAGAAAAGGTCTTTTGGAAAGCCAAATTAGAGCAGTTACAAGAAATGCCAGATGAAGACGTAATGGACAGGTTAATG ATTAGCTACACAGCTTTAACCGAGGAAGCACAACAAATATTTTTAGATATTGCTTGCTTTTACATTGGAGAGAATAAAGAAAAGGCGTCTTACATGTGGA GCGATTGCAAATATCATCCTGCCATTAACGTCAAGATTCTCATTCAAAGATCTATGCTCAAAATTGGGGATCGTAATGAGTTTCAAATGCACGATCAATT TAGAGATATGGGGAGAGAAATTGTCCGTAAAGAAGATACTGACCATCCAGAAAGGAGAAGTAGAATATGGGTAGAGAATGAAGGCAAAGAAATTTTACTC GACAACAAGGGAACAAATCAAGTCAGAGCACTCAGAGGCGGAAGAGCACTCAGAATCATATTTTACCCCAGGAGCAAATCTGTTGAAAGTGGATGTTTTA GGAAGATGACAGAATTAATGAAGTGTAAGGCGACCAACTTCAATATGAAAAACATGGTCATATTTGAAGCCAATACTTATGGAATTGACGATATCCCAAC AGTAAAGGAGGCAAAGAAGCTCAAATTTCTCAAGCTTGGCAATTGTAGAAAGATGAGTAAACTTCCAGAATTGCCAGAGAGCCTAGAGATGCTACATCTT AGTAAGTTCGACAATAAAAAGGAAGATATGGAGCTCGGGAATCTGCACAACTTAAAAGTAGTAAGTTTAAAATCTTGTACGCTGGGGAGGTTCAACGGCG GCACATTTGGGATGATGAAGGAGCTTCGAGAGCTCAAGCTCACTCACATTAAATGTGATTTTGATAGTTTCAGAAGAGTGATCGCCAATGTCGGACAACT CTCATCTCTCGAAATCTTGGAGTTCAACAGTCCCAAGCTGAAGGATGTTTTGGAAGGGATTAAGCTACCGAAAAGCTTAAAGGTGCTAGAAACTTCCTCT TGTTTCGATAATCTTCCGGAGCTCTTGGATTTAGAGGAATTCTCTATCATCAAGAATGATGCGAGGACAAGTATGGTTGAAGGTCAGAACACTGTGCTAC CATCATCCCTCACTACCGTAGTCATTTTCCATCTACAATCTCATACATTCCTGAATCTGACCAATCTGAGCAACTTGACTCAATTAAAACTTTGGGGTAG GCCTTATCTTCAAGAGATCCAAGGACTTGGAGGGCTGAAATCATTACAGATTCTTTCGATTGGTAAAATGGAAAAGTTAGCTCACATTGAGGGCCTTGGG ATTCTCATGTCTTCCTCCTACTGCAAGTTGACACATGTGGAGATAATCGAATGTCCTCTTCTTCGTGCATTGCAGACATTCGAACAACATGATGATGAAG ATGATACTAATGATGCAGTACAAATCGAATCTTTAATCAAACTGGAGATAGTTAAATGTCCATTAATGGATTGTAGATCAATACCCAAATTGTCCGAGTT TCCAAAACTCAATGTGTTGACAATTCGGGACATCGGTTCGAATGTCAATGATGAATCAACCAGCCAGCAGGATCAGCTACTGGAAGGACTTGACAATCTT GGAGAGTTGGTTCAATTGCAAGTGCGCCATTTAGCAAAAGTACAAAGACTACCTTCTCTATCAAAGCTAAGCAAGTTGACGAAGTTAACATTGTATGACC TTCCATGTTTGCGAGAGATTGTGGGACTCGGAAATTTGAAGTCTTTAAAAGAGTTAGAAGTGAGTGTTTGCATTTCGTTGGAAAGAATGCTCGTCGAGGA TCTGACCAAGTTGAAGAAGCTAAGTTTGTCTGACCTTCCACGTTTGAGAGAGATTGTGGGACTCGGAGATTTAAAGTCGTTAAAAGAGTTAGAAGTGAGT GATTGCATTTCGTTGGAAAGAATGCTCGTCGAGGATCTGACCAAGTTGACGGTGTTAATAGTGTCTGGCCTTCCATGTTTGCAAGAGATTGTGGGGCTCG GAGCATTGAAGTCGTTACAAGGGTTAGCAGTGAGACGTTGCATTTCGTTGGAAAGAATGCCCGTCGAGGGACTCTCCTACTCTACTATGTTTTATATAGA TTTGGATTTGACAGGATGTACAAAGTTCACAAACGCTCATTCTGATCTCTCCCCCCTCACCACCCAAAGGGCCTTCTATCCACGTCGGCTAGAAGTAAAC ATCATCTGGCCAGAAGAACATTTGGGGCCTTTTCAGAGAGGGTCGAGGCCACCGAGTGAGGAATCTGACGATGATACGTGGGAGGAATCTGACGACAATA TGGGTGAGGAATCTGACGACGATTTATGA
AA sequence Show only first row Show all	>Lus10000423 pacid=23142582 polypeptide=Lus10000423 locus=Lus10000423.g ID=Lus10000423.BGIv1.0 annot-version=v1.0 MVLRWSGHDGSQLVSLSEAVTAVRVRVECGLQPEAFMYERNLWTKVKEKNSKGGQPKDDLSGWGEWLETLVTEICCLCIKRNLVDRTIELPWDSAEEKYL SKCLLDSAVHDPSSTTGSLLAVYYFRGNSKQLLSPIEQSLHKDESYGFDDPMDLGWRMPIEDLTKLKKLTLSVLLLLREIVELGTLKSLKKLEVRGCISL ERMPVQGLVSDLRERMPVIDSMDYLDVSSIKLDLRGCTKFTNLDSDLSPLATEGADLRGVELIINWPDEPGTDIPPAAFLWRDIMLSEDAEDSNSEILSI FSKQHSSQTAKSDRQDHQEPTIQSEGAVEMYFLVGAAIVALFIALFKLFLGRRRKTVNSDDSNNDTLQQSDSASTFGDSGSVPLPIGEYEVFLNFRGPDT RDNITNILYRFLVLSKIRTFRDDDELRKGEGIWPSLVKAIGQSKISVPIFSPRYAESKWCLKELAAVVEHQKREKGHVILPIFYKIDPRDVRHQTGPYKT AFQQHKRSNKFDEDTIQSWKVALNEVGSLKGWHIKTEKEAVDVADVISGVVWSHLIKNNSTLEIDELVGIDDHMKQVVDMLDLGAKGVNLIGIHGMGGIG KTTLATAVYNKVSTCFDRYSFVKDIRETQKQTKDVLVLQKKLLSDILSMESVGPKAKEIIRERVTQFKILVVLDDVDEKFNFEEVLGNSKSFAPGSCFII TSRDIKVLERLTGDKSKLYEVKKMDDSHSLQLFYKHAFREDPVSSDLDDLSKSIVSKAGGLPLALKVIGSLLWREEKVFWKAKLEQLQEMPDEDVMDRLM ISYTALTEEAQQIFLDIACFYIGENKEKASYMWSDCKYHPAINVKILIQRSMLKIGDRNEFQMHDQFRDMGREIVRKEDTDHPERRSRIWVENEGKEILL DNKGTNQVRALRGGRALRIIFYPRSKSVESGCFRKMTELMKCKATNFNMKNMVIFEANTYGIDDIPTVKEAKKLKFLKLGNCRKMSKLPELPESLEMLHL SKFDNKKEDMELGNLHNLKVVSLKSCTLGRFNGGTFGMMKELRELKLTHIKCDFDSFRRVIANVGQLSSLEILEFNSPKLKDVLEGIKLPKSLKVLETSS CFDNLPELLDLEEFSIIKNDARTSMVEGQNTVLPSSLTTVVIFHLQSHTFLNLTNLSNLTQLKLWGRPYLQEIQGLGGLKSLQILSIGKMEKLAHIEGLG ILMSSSYCKLTHVEIIECPLLRALQTFEQHDDEDDTNDAVQIESLIKLEIVKCPLMDCRSIPKLSEFPKLNVLTIRDIGSNVNDESTSQQDQLLEGLDNL GELVQLQVRHLAKVQRLPSLSKLSKLTKLTLYDLPCLREIVGLGNLKSLKELEVSVCISLERMLVEDLTKLKKLSLSDLPRLREIVGLGDLKSLKELEVS DCISLERMLVEDLTKLTVLIVSGLPCLQEIVGLGALKSLQGLAVRRCISLERMPVEGLSYSTMFYIDLDLTGCTKFTNAHSDLSPLTTQRAFYPRRLEVN IIWPEEHLGPFQRGSRPPSEESDDDTWEESDDNMGEESDDDL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27180			disease resistance protein (TI...		Lus10000423 [exp]	0	1
AT3G52420		ATOEP7	outer envelope membrane protei...		Lus10003733 [exp]	2.0	0.8868
AT4G37340		CYP81D3	"cytochrome P450, family 81, s...		Lus10024973 [exp]	4.9	0.8160
AT5G39590			TLD-domain containing nucleola...		Lus10012406 [exp]	7.3	0.7747
AT5G10250		DOT3	DEFECTIVELY ORGANIZED TRIBUTAR...		Lus10026046 [exp]	8.1	0.8239
AT5G39590			TLD-domain containing nucleola...		Lus10024317 [exp]	8.4	0.7799
					Lus10026002 [exp]	8.8	0.7122
AT2G45910			U-box domain-containing protei...		Lus10036363 [exp]	9.2	0.8156
AT1G59950			NAD(P)-linked oxidoreductase s...		Lus10039266 [exp]	10.4	0.8183
					Lus10024086 [exp]	13.7	0.7731
AT5G37590			Tetratricopeptide repeat (TPR)...		Lus10004034 [exp]	14.4	0.8018

Compare expression of checked genes

Lus10000423 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.