Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39730 784 / 0 RCA rubisco activase (.1.2.3) AT1G73110 341 / 3e-113 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G03670 45 / 9e-05 CDC48B cell division cycle 48B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002710 [exp] 945 / 0 AT2G39730 787 / 0.0 rubisco activase (.1.2.3) Lus10004708 [exp] 781 / 0 AT2G39730 733 / 0.0 rubisco activase (.1.2.3) Lus10040275 [exp] 780 / 0 AT2G39730 730 / 0.0 rubisco activase (.1.2.3) Lus10003234 [exp] 765 / 0 AT2G39730 757 / 0.0 rubisco activase (.1.2.3) Lus10010868 [exp] 650 / 0 AT2G39730 642 / 0.0 rubisco activase (.1.2.3) Lus10035616 [exp] 385 / 1e-132 AT2G39730 362 / 5e-124 rubisco activase (.1.2.3) Lus10041627 [exp] 343 / 5e-114 AT1G73110 639 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G200500 [exp] 820 / 0 AT2G39730 797 / 0.0 rubisco activase (.1.2.3) Potri.008G058500 [exp] 818 / 0 AT2G39730 803 / 0.0 rubisco activase (.1.2.3) Potri.016G101100 [exp] 697 / 0 AT2G39730 696 / 0.0 rubisco activase (.1.2.3) Potri.001G037300 [exp] 347 / 8e-116 AT1G73110 663 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10000518 pacid=23158768 polypeptide=Lus10000518 locus=Lus10000518.g ID=Lus10000518.BGIv1.0 annot-version=v1.0 ATGGCCGCCACCATCTCCACCGTCGGATCTGTCAACAGAGCACCGCTGTCGTTTAATGGGTGTGGAGCTGGGAATTCAGTCCCGGCGTCGGCTTTCTTCG GGAAGAAAGTAGTAGGAGTGAGGTCGTCGTTCCCGAAGCTTTCAGGGAACTTCAAGGTTGCGGCTGCGGCGGCTGAAGACGCAGATGAGGAGAAGCAAAC GGAGAAGGACAGATGGGGACATCTAGTAAAGGACATGTCTGATGACCAACAAGACATCACCAGAGGGAAGGGTATGGTTGACTCTCTGTTCCAAGCCCCT CAGATGGCCGGAACTCACTACGCCGTCATGAGCTCCTACGACTACATCAGCAAGGGACTTAGAACATACGATTTCGACAACACAATGGGAGGATTTTACA TCGCCCCAGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCTTGAACCTCCCTAACATTAAGGTTCCCTTGATTTTGGGGGTGTGGGGAGG CAAAGGTCAAGGAAAATCCTTCCAGTGTGAGCTTGTGTTTGCCAAGATGGGAATCAACCCAATCATGATGAGCGCGGGAGAGTTGGAAAGTGGGAACGCG GGAGAGCCAGCGAAACTCATCAGGCAGAGGTACCGTGAGGCGTCGGACATTATCAAGAAGGGGAAAATGTGCTGCCTCTTCATCAACGATCTCGACGCAG GTGCTGGTCGTATGGGCGGTACAACGCAGTACACTGTCAACAACCAGATGGTTAACGCCACTCTCATGAACATAGCCGATAACCCAACCAACGTCCAGCT CCCCGGTATGTACAACAAGGAAGAGAACGCCCGTGTCCCAATCATCGTCACCGGTAACGATTTCTCAACACTATACGCCCCTCTCATCCGTGATGGTCGT ATGGAGAAGTTCTACTGGGCTCCCACTAGGGATGACCGTATTGGTGTCTGTATTGGCATCTTCAAGACCGACAACATCCCCAACGATGACATCGTCAGGA TCGTTGACTCCTTCCCTGGCCAATCCATCGATTTTTTTGGGGCGCTGAGGGCGAGGGTGTACGACGATGAGGTGAGGAAGTGGATATCAGGAGTAGGAGT GGACACAATAGGGAAGAAGCTGGTGAACTCAAAGGACGGACCACCGACATTCGAGCAGCCGAAGATGACAGTTGAGAAGCTGTTGGAGTATGGGAACATG TTGGTGCAAGAGCAAGACAACGTCAAGAGAGTGCAGTTGGCGGACAAGTATATGAGCGAGGCTGCTCTTGGTGATGCTAACAAGGATGCCATTGATCGTG GAAGTTTCTACGGGCAAGCGGCTCAGCAAGGAAATTTGCCAGTTCCAGAAGGATGCACCGACCCAAGTGCAGACAACTTTGATCCAACTGCAAGGAGTGA CGATGGAAGCTGCCTTTACCAGTTCTAA
AA sequence Show only first row Show all	>Lus10000518 pacid=23158768 polypeptide=Lus10000518 locus=Lus10000518.g ID=Lus10000518.BGIv1.0 annot-version=v1.0 MAATISTVGSVNRAPLSFNGCGAGNSVPASAFFGKKVVGVRSSFPKLSGNFKVAAAAAEDADEEKQTEKDRWGHLVKDMSDDQQDITRGKGMVDSLFQAP QMAGTHYAVMSSYDYISKGLRTYDFDNTMGGFYIAPAFMDKLVVHITKNFLNLPNIKVPLILGVWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNA GEPAKLIRQRYREASDIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIIVTGNDFSTLYAPLIRDGR MEKFYWAPTRDDRIGVCIGIFKTDNIPNDDIVRIVDSFPGQSIDFFGALRARVYDDEVRKWISGVGVDTIGKKLVNSKDGPPTFEQPKMTVEKLLEYGNM LVQEQDNVKRVQLADKYMSEAALGDANKDAIDRGSFYGQAAQQGNLPVPEGCTDPSADNFDPTARSDDGSCLYQF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39730		RCA	rubisco activase (.1.2.3)		Lus10000518 [exp]	0	1
AT2G13360		SGAT, AGT1, AGT	L-serine:glyoxylate aminotrans...		Lus10022424 [exp]	1.7	0.9468
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10016176 [exp]	3.2	0.9465
AT3G63140		CSP41A	chloroplast stem-loop binding ...		Lus10006931 [exp]	3.5	0.9535
AT3G10230		AtLCY, LYC	lycopene cyclase (.1.2)		Lus10038986 [exp]	4.8	0.9263
AT1G18060			unknown protein		Lus10017999 [exp]	4.9	0.9519
AT2G39730		RCA	rubisco activase (.1.2.3)		Lus10040275 [exp]	5.5	0.9399
AT1G42970		GAPB	glyceraldehyde-3-phosphate deh...		Lus10016033 [exp]	6.3	0.9467
AT2G40100		LHCB4.3	light harvesting complex photo...		Lus10040191 [exp]	8.5	0.9376
AT5G08410		FTRA2	ferredoxin/thioredoxin reducta...		Lus10041002 [exp]	8.9	0.9297
AT5G38420			Ribulose bisphosphate carboxyl...		Lus10009172 [exp]	10.4	0.9404

Compare expression of checked genes

Lus10000518 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.