Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13840 86 / 3e-18 GRAS GRAS family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022098 [exp] 239 / 1e-78 ND / Lus10019361 [exp] 49 / 5e-06 AT4G37650 403 / 5e-136 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Lus10039709 [exp] 42 / 0.0004 AT3G49950 350 / 3e-117 GRAS family transcription factor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G065400 [exp] 100 / 3e-23 AT3G13840 430 / 1e-145 GRAS family transcription factor (.1) Potri.001G168800 [exp] 97 / 4e-22 AT3G13840 481 / 6e-166 GRAS family transcription factor (.1) Potri.017G019900 [exp] 54 / 6e-08 AT4G37650 405 / 1e-137 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Potri.017G041500 [exp] 42 / 0.0004 AT3G49950 370 / 2e-125 GRAS family transcription factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10000531 pacid=23140358 polypeptide=Lus10000531 locus=Lus10000531.g ID=Lus10000531.BGIv1.0 annot-version=v1.0 ATGACCAGTGAAGGATCACACCCCAACTCCCAACTACATGATCCAACTGCAGCTGCTGCTGCTTCTGATCATATGCTGGATTGCTGGTTGGAATCTGTCT CCTATCTTCCATCTTTCCTTGATGATACGAATGACATCAACAGCTATCCATGGTGGATTCCCCCTGATGAATTCGGCCATGACCCGCTTCTTCCCCCATC TACTATCAGTAATCCCAGCCATCATCATCATCATCACCAGCTACAACAGAATCACCAGCTAAACCATGGTGGTGGTACCACATCAACAACAACAATGGCG GCTGCAACTCCACAAAGCATGCCATCTCCGGATATTATTAGTACCTTCCAAACCATCCCAACTAGCCACCTTATTCAACAGGAAAATACCATCACTAAAT ATGATCACCCACAAGCATCAAACCTTCCGAGGAAAAGGAAACTACCCGATGTACCAGTGCCCAGACCATCGCCGGTCAACATCCCCCATGTCAAGAAAAG CCAAAGCCAGAGCCAGAGCCAGAGCTGTGATGATCATCATCAAGACAGCAGCAGTGGTGGTGGTGGTGGTGATTCCTCTGCTGTAATTGAAAGCGGGGGA GGAACGGTAGCCGCCAGCGGCTGCGGCGGAGGAGTGAAGAAAGCTAACGGAGGTAAGAAAGGAGAGAAGCAGAACCCTCTTTGCGCCGGCGGAAGTAATA AAGAAGGGAGATGGGCAGAGCAGCTCCTCAATCCTTGCGCCGCCGCTATCACTGCCGGAAACTTCTCCCGTGTTCAACACCTTCTCTATGTCCTCCACGA GCTCTCCTCCCTTACCGGAAGCGCCAACCACCGTCTGGCAGCGTATGGCCTCAGAGCCCTCACTCATCATTTGTCAACCACAACAAATACTTCCCCAGCG GCGGCGATGGGGCCCCCGGGGGCCCCAAACTTTGCTGCCACGGAGGCGCGGGTATTGCAAACAACCGCCTCAGAAATCGCTACTCAAATTCTACGAGGTT AG
AA sequence Show only first row Show all	>Lus10000531 pacid=23140358 polypeptide=Lus10000531 locus=Lus10000531.g ID=Lus10000531.BGIv1.0 annot-version=v1.0 MTSEGSHPNSQLHDPTAAAAASDHMLDCWLESVSYLPSFLDDTNDINSYPWWIPPDEFGHDPLLPPSTISNPSHHHHHHQLQQNHQLNHGGGTTSTTTMA AATPQSMPSPDIISTFQTIPTSHLIQQENTITKYDHPQASNLPRKRKLPDVPVPRPSPVNIPHVKKSQSQSQSQSCDDHHQDSSSGGGGGDSSAVIESGG GTVAASGCGGGVKKANGGKKGEKQNPLCAGGSNKEGRWAEQLLNPCAAAITAGNFSRVQHLLYVLHELSSLTGSANHRLAAYGLRALTHHLSTTTNTSPA AAMGPPGAPNFAATEARVLQTTASEIATQILRG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13840	GRAS		GRAS family transcription fact...		Lus10000531 [exp]	0	1
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10012240 [exp]	6.2	0.7626
AT2G30140			UDP-Glycosyltransferase superf...		Lus10026393 [exp]	7.7	0.8122
AT3G21690			MATE efflux family protein (.1...		Lus10027169 [exp]	7.7	0.8480
AT3G08840			D-alanine--D-alanine ligase fa...		Lus10001259 [exp]	12.6	0.8231
AT1G15780			unknown protein		Lus10025450 [exp]	25.5	0.7371
AT1G51700	DOF	ADOF1, AtDof1. ...	DOF zinc finger protein 1 (.1)		Lus10035504 [exp]	35.0	0.8094
AT3G02645			Plant protein of unknown funct...		Lus10033668 [exp]	43.6	0.7341
AT5G49890		ATCLC-C, CLC-C	chloride channel C (.1)		Lus10007433 [exp]	58.4	0.7793
AT1G18010			Major facilitator superfamily ...		Lus10009416 [exp]	67.0	0.7477
AT4G01240			S-adenosyl-L-methionine-depend...		Lus10031968 [exp]	73.7	0.7746

Compare expression of checked genes

Lus10000531 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.