Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13840 207 / 8e-65 GRAS GRAS family transcription factor (.1) AT3G49950 73 / 3e-15 GRAS GRAS family transcription factor (.1) AT5G17490 59 / 2e-10 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT3G03450 56 / 2e-09 GRAS RGL2 RGA-like 2 (.1) AT4G17230 54 / 1e-08 GRAS SCL13 SCARECROW-like 13 (.1) AT4G37650 50 / 3e-07 GRAS SGR7, SHR SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) AT5G66770 47 / 4e-06 GRAS GRAS family transcription factor (.1) AT2G01570 44 / 5e-05 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT1G66350 44 / 5e-05 GRAS RGL1 RGA-like 1 (.1) AT1G14920 43 / 8e-05 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022097 [exp] 367 / 1e-130 AT3G13840 264 / 5e-86 GRAS family transcription factor (.1) Lus10019281 [exp] 61 / 5e-11 AT4G37650 509 / 2e-177 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Lus10018498 [exp] 61 / 7e-11 AT3G49950 347 / 3e-116 GRAS family transcription factor (.1) Lus10039709 [exp] 61 / 8e-11 AT3G49950 350 / 3e-117 GRAS family transcription factor (.1) Lus10032882 [exp] 58 / 6e-10 AT1G55580 294 / 2e-95 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) Lus10033583 [exp] 56 / 3e-09 AT2G01570 681 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10025200 [exp] 56 / 5e-09 AT4G37650 484 / 8e-169 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Lus10017626 [exp] 55 / 8e-09 AT2G01570 679 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10012089 [exp] 54 / 1e-08 AT4G37650 483 / 2e-167 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G168800 [exp] 300 / 4e-100 AT3G13840 481 / 6e-166 GRAS family transcription factor (.1) Potri.003G065400 [exp] 288 / 3e-95 AT3G13840 430 / 1e-145 GRAS family transcription factor (.1) Potri.005G145600 [exp] 69 / 1e-13 AT3G49950 521 / 0.0 GRAS family transcription factor (.1) Potri.007G053500 [exp] 64 / 4e-12 AT3G49950 524 / 0.0 GRAS family transcription factor (.1) Potri.017G019900 [exp] 62 / 3e-11 AT4G37650 405 / 1e-137 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Potri.017G041500 [exp] 61 / 8e-11 AT3G49950 370 / 2e-125 GRAS family transcription factor (.1) Potri.007G063300 [exp] 57 / 1e-09 AT4G37650 576 / 0.0 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Potri.007G119000 [exp] 57 / 2e-09 AT3G49950 369 / 7e-125 GRAS family transcription factor (.1) Potri.007G132000 [exp] 56 / 4e-09 AT4G37650 410 / 4e-140 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Potri.005G186500 [exp] 54 / 1e-08 AT1G21450 685 / 0.0 SCARECROW-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10000532 pacid=23140357 polypeptide=Lus10000532 locus=Lus10000532.g ID=Lus10000532.BGIv1.0 annot-version=v1.0 ATGAATATAAACCTGCAGATCAATCGCCTCGACAATCGATCCTTACAGAATCTGAACACCCAGGTAATCAACAAGGACAGGGAAGAAACTCTAGTTGTCT GCGCCCAATTCAGGCTACACCACCTGAATCACAACAACCCGGATGAGAGGAGCGAGTTTTTAAGGGTTCTGAGGAGTCTGGAGCCCAAGGGAGTAATCCT GAGCGAGAACAACATGGATTGCAGCTGCAACGGGTGCGTGGATTATTCGAGCGGGTTCACGAGGAGGGTGGAGTATCTGTGGAGGTTTCTGGATTCTACG AGCTCAGCGTTCAAAGGGAGGGAGAGCGAAGAGAGAAGGATGATGGAAGGGGAAGCAGCAAAGGCGTTGACAAACAGTGGGGAGATGAACGAGAGGAAAG AGCAGTGGTGCGAGAGGATGAGAGGGGTTGGGTTTTCAGGGGAAGGGTTTTGCGAGGACGCCATTGATGAAGCTCGAGCTCTGTTGAGGAAGCATGATAA CAATTGGGAAATGAGGGTTGAAGAGAAAGATGGGTTCGTTGGGTTGTGGTGGAAAGGACAGCCCGTTTCGTTTTGCTCCTTGTGGAAATTGCAAGCAGAA TGA
AA sequence Show only first row Show all	>Lus10000532 pacid=23140357 polypeptide=Lus10000532 locus=Lus10000532.g ID=Lus10000532.BGIv1.0 annot-version=v1.0 MNINLQINRLDNRSLQNLNTQVINKDREETLVVCAQFRLHHLNHNNPDERSEFLRVLRSLEPKGVILSENNMDCSCNGCVDYSSGFTRRVEYLWRFLDST SSAFKGRESEERRMMEGEAAKALTNSGEMNERKEQWCERMRGVGFSGEGFCEDAIDEARALLRKHDNNWEMRVEEKDGFVGLWWKGQPVSFCSLWKLQAE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13840	GRAS		GRAS family transcription fact...		Lus10000532 [exp]	0	1
AT5G64260		EXL2, MSJ1.10	EXORDIUM like 2 (.1)		Lus10010352 [exp]	2.8	0.9089
AT5G61510			GroES-like zinc-binding alcoho...		Lus10009658 [exp]	4.7	0.9233
AT1G12550		HPR3	hydroxypyruvate reductase 3, D...		Lus10014133 [exp]	8.2	0.8594
AT4G16210		ECHIA, E-COAH-2	ENOYL-COA HYDRATASE 2, enoyl-C...		Lus10016920 [exp]	13.9	0.8962
AT2G33580			Protein kinase superfamily pro...		Lus10039406 [exp]	17.7	0.8391
AT4G05440		EDA35	embryo sac development arrest ...		Lus10027955 [exp]	18.3	0.8918
AT2G33320			Calcium-dependent lipid-bindin...		Lus10032780 [exp]	20.1	0.8514
AT3G04580		EIN4	ETHYLENE INSENSITIVE 4, Signal...		Lus10022009 [exp]	20.8	0.8605
AT3G01850			Aldolase-type TIM barrel famil...		Lus10035219 [exp]	22.0	0.8968
AT4G40020			Myosin heavy chain-related pro...		Lus10000283 [exp]	22.6	0.8456

Compare expression of checked genes

Lus10000532 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.