Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17230 577 / 0 GRAS SCL13 SCARECROW-like 13 (.1) AT5G48150 498 / 4e-173 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT1G50600 483 / 1e-165 GRAS SCL5 scarecrow-like 5 (.1) AT2G04890 452 / 2e-156 GRAS SCL21 SCARECROW-like 21 (.1) AT1G21450 376 / 6e-124 GRAS SCL1 SCARECROW-like 1 (.1) AT1G14920 213 / 3e-62 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT3G03450 213 / 3e-62 GRAS RGL2 RGA-like 2 (.1) AT1G66350 209 / 5e-61 GRAS RGL1 RGA-like 1 (.1) AT1G07530 210 / 3e-59 GRAS SCL14, ATGRAS2 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) AT5G52510 201 / 6e-57 GRAS SCL8 SCARECROW-like 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017554 [exp] 1023 / 0 AT4G17230 612 / 0.0 SCARECROW-like 13 (.1) Lus10012323 [exp] 525 / 0 AT5G48150 659 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10006369 [exp] 518 / 2e-180 AT5G48150 633 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10016596 [exp] 509 / 2e-176 AT5G48150 624 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10035840 [exp] 442 / 5e-150 AT5G48150 498 / 2e-172 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10036623 [exp] 427 / 5e-145 AT5G48150 486 / 9e-169 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10003772 [exp] 377 / 6e-129 AT5G48150 439 / 2e-154 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10042776 [exp] 378 / 7e-125 AT1G21450 682 / 0.0 SCARECROW-like 1 (.1) Lus10029747 [exp] 377 / 1e-124 AT1G21450 682 / 0.0 SCARECROW-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G009700 [exp] 749 / 0 AT4G17230 675 / 0.0 SCARECROW-like 13 (.1) Potri.006G016200 [exp] 716 / 0 AT4G17230 641 / 0.0 SCARECROW-like 13 (.1) Potri.014G164400 [exp] 556 / 0 AT5G48150 716 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Potri.001G361700 [exp] 518 / 2e-180 AT1G50600 637 / 0.0 scarecrow-like 5 (.1) Potri.001G409500 [exp] 457 / 8e-156 AT5G48150 518 / 3e-180 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Potri.011G131100 [exp] 446 / 3e-151 AT1G50600 505 / 8e-174 scarecrow-like 5 (.1) Potri.005G186500 [exp] 387 / 3e-128 AT1G21450 685 / 0.0 SCARECROW-like 1 (.1) Potri.002G073400 [exp] 385 / 2e-127 AT1G21450 707 / 0.0 SCARECROW-like 1 (.1) Potri.001G326000 [exp] 242 / 7e-72 AT1G66350 296 / 2e-92 RGA-like 1 (.1) Potri.017G142400 [exp] 226 / 1e-65 AT5G52510 438 / 7e-146 SCARECROW-like 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10000539 pacid=23160079 polypeptide=Lus10000539 locus=Lus10000539.g ID=Lus10000539.BGIv1.0 annot-version=v1.0 ATGACTCAATCGCAGAAGCATAGGAATTCACCAACTATGCATGGTTTTTACCATCAGCCCATCAAAGAAGAGGATACATACTGTTTGTCTCAGATCGAAC TTCTAGACAACAACAATATGTTCTCCATTGTTGGGAGCCAAGGAGAAGCCCCCAGTATTTCCTTCCAGAACTACAAGGACGAATATTTCACGCTTGAGTC ATCCTCCACCACGACTACCACTGGTTTCCTCTACGATTCTCCTGCCCCCAGTGTCTCATCATGCAGCCGAAGTCCTTTCTCCCCACAGGGCTCGCATTCT TGCCTCACAGATCCTCATCATTCCCCCGATGGCTCTCCAGCGAGCAGATCACCCTATGCCACCGATTCTGGAAACGTTCTCTGGCAGAAATTGAGGGAGA TGGAGATGTCATTGCTGGGTCCCGAAACTGAGAATTTCTGCTTCTCTAACGAATCTCATTCGTTAGAAAGGCTGGATGCGGATCAGATTGCGGAGATGAT CCCCAGATTAGATCTCAAGCAAGTGCTGATAGGGTGTGCTCAGGCTATAGATATGGTTGACATAAGTAAAGCTGCTGGTCTAATGCATGTGTTGGAGCAA ATGGTATCGGTCTGTGGCGAACCGATACAACGAGTAGGTGCTTACTTGTTGGAAGGACTTCGAGCGAGGTTAGAGCTCTCTGGAAGTAGAATCTACCGAG CTTTGAAATGCGATTCTCCAGTAAGTTCTGATCTGATGACTTATATGGGTATACTCTATCAGATATGTCCATACTGGAAGTTTGCATACATGTCAGCAAA TGTCGTTATTCATGAAGCCGTCCAGTACGAACCTAGAATCCACATTATCGATTTCCAGATAGCTCAAGGTAGCCAGTGGATTCCCTTGATACAGTCTCTC GCACAACGTCCAGGTGGCGCTCCTATAATTCGTATAACTGGAGTCGACGATTCCCAGTCTGCTCATGCTCGTGGCGGGGGGCTTCATATCGTCGGGGAGA GGCTATCGAAAGTTGCAGCAGAATGCAACGTGGTGTTCGAGTTCCACGACACTGCGATGGTAGGCTGCGAGATTCAGAGGGAGCATCTAAAGGTCGAACC TTTACGGGAGGCAGTGGTGGTAAACTTTCCTTATGCGTTACATCACATGCCGGACGAGAGTGTGGACACTTGGAACCATCGAGACCGGTTGCTTAGGCTG GTGAAAAGCCTTTCGCCGAGGATCGTGACACTGGTCGAGCAAGAATCCAACACCAACACCACTCCTTTCCACCTGAGGTTTGTGGAGACACTCGAGTACT ACACGGCGATGTTCGAATCGATCGATGTAGCTCGTCCTAGAGATGATAAGCAGAGGATAAGCGCTGAGCAGCACTGCGTCGCGAGGGATATAGTCAATGT GATTGCCTGCGAGGGTGCAGAGAGGGTGGAACGGCACGAGGTTCTCGGGAAGTGGAGATCAAGGTTCCAGATGGCTGGATTCTCGCAGTATCCATTCAGT TCTTCGGTGACTGCTGCTGTGAGAGATGTGCTGAAGGATTATGATACGAGGTATAGAGTTGAAGAAAGAGATGGTGCACTGTACCTTTACTGGTTGAGAA GAGCAATGGGAACTTCTTCTGCTTGGAGGTGA
AA sequence Show only first row Show all	>Lus10000539 pacid=23160079 polypeptide=Lus10000539 locus=Lus10000539.g ID=Lus10000539.BGIv1.0 annot-version=v1.0 MTQSQKHRNSPTMHGFYHQPIKEEDTYCLSQIELLDNNNMFSIVGSQGEAPSISFQNYKDEYFTLESSSTTTTTGFLYDSPAPSVSSCSRSPFSPQGSHS CLTDPHHSPDGSPASRSPYATDSGNVLWQKLREMEMSLLGPETENFCFSNESHSLERLDADQIAEMIPRLDLKQVLIGCAQAIDMVDISKAAGLMHVLEQ MVSVCGEPIQRVGAYLLEGLRARLELSGSRIYRALKCDSPVSSDLMTYMGILYQICPYWKFAYMSANVVIHEAVQYEPRIHIIDFQIAQGSQWIPLIQSL AQRPGGAPIIRITGVDDSQSAHARGGGLHIVGERLSKVAAECNVVFEFHDTAMVGCEIQREHLKVEPLREAVVVNFPYALHHMPDESVDTWNHRDRLLRL VKSLSPRIVTLVEQESNTNTTPFHLRFVETLEYYTAMFESIDVARPRDDKQRISAEQHCVARDIVNVIACEGAERVERHEVLGKWRSRFQMAGFSQYPFS SSVTAAVRDVLKDYDTRYRVEERDGALYLYWLRRAMGTSSAWR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17230	GRAS	SCL13	SCARECROW-like 13 (.1)		Lus10000539 [exp]	0	1
AT5G24590	NAC	TIP, ANAC091	Arabidopsis NAC domain contain...		Lus10015587 [exp]	1.7	0.9549
AT1G18970		GLP4	germin-like protein 4 (.1)		Lus10034191 [exp]	2.0	0.9515
AT1G66420	GeBP		DNA-binding storekeeper protei...		Lus10017793 [exp]	2.6	0.9356
					Lus10043392 [exp]	4.5	0.9423
AT2G23810		TET8	tetraspanin8 (.1)		Lus10019965 [exp]	4.6	0.9443
AT1G14860		ATNUDT18	nudix hydrolase homolog 18 (.1...		Lus10021780 [exp]	4.9	0.9237
AT3G05580		TOPP9	type one protein phosphatase 9...		Lus10029882 [exp]	4.9	0.9037
AT1G09070		(AT)SRC2, (AT)S...	soybean gene regulated by cold...		Lus10029901 [exp]	5.1	0.9236
AT4G17230	GRAS	SCL13	SCARECROW-like 13 (.1)		Lus10017554 [exp]	6.3	0.9431
AT3G11760			unknown protein		Lus10021254 [exp]	7.5	0.9221

Compare expression of checked genes

Lus10000539 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.