Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16420 538 / 0 PRZ1, ADA2B PROPORZ1, homolog of yeast ADA2 2B (.1.2.3) AT3G07740 392 / 2e-131 HXA2, HXA02, HAC10, ATADA2A, ADA2A homolog of yeast ADA2 2A (.1.2.3.4) AT4G34430 62 / 8e-10 ATSWI3D, CHB3 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) AT1G21700 60 / 2e-09 CHB4, ATSWI3C SWITCH/sucrose nonfermenting 3C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017553 [exp] 872 / 0 AT3G07740 625 / 0.0 homolog of yeast ADA2 2A (.1.2.3.4) Lus10006383 [exp] 475 / 2e-163 AT3G07740 581 / 0.0 homolog of yeast ADA2 2A (.1.2.3.4) Lus10023583 [exp] 82 / 4e-16 AT4G34430 704 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Lus10040472 [exp] 80 / 2e-15 AT4G34430 694 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Lus10026334 [exp] 72 / 5e-13 AT1G21700 556 / 0.0 SWITCH/sucrose nonfermenting 3C (.1) Lus10042329 [exp] 71 / 1e-12 AT4G34430 652 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Lus10042734 [exp] 52 / 9e-07 AT1G21700 736 / 0.0 SWITCH/sucrose nonfermenting 3C (.1) Lus10029695 [exp] 51 / 2e-06 AT1G21700 666 / 0.0 SWITCH/sucrose nonfermenting 3C (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G017300 [exp] 692 / 0 AT4G16420 640 / 0.0 PROPORZ1, homolog of yeast ADA2 2B (.1.2.3) Potri.016G007600 [exp] 676 / 0 AT4G16420 602 / 0.0 PROPORZ1, homolog of yeast ADA2 2B (.1.2.3) Potri.014G166300 [exp] 513 / 2e-178 AT3G07740 582 / 0.0 homolog of yeast ADA2 2A (.1.2.3.4) Potri.004G135400 [exp] 130 / 1e-35 AT4G16420 102 / 9e-26 PROPORZ1, homolog of yeast ADA2 2B (.1.2.3) Potri.009G114900 [exp] 61 / 1e-09 AT4G34430 727 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Potri.002G080600 [exp] 59 / 5e-09 AT1G21700 679 / 0.0 SWITCH/sucrose nonfermenting 3C (.1) Potri.005G180800 [exp] 59 / 6e-09 AT1G21700 692 / 0.0 SWITCH/sucrose nonfermenting 3C (.1) Potri.004G153300 [exp] 59 / 6e-09 AT4G34430 711 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0006 [flax] [poplar] C1 PF00569 [flax] [poplar] ZZ Zinc finger, ZZ type CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10000540 pacid=23160074 polypeptide=Lus10000540 locus=Lus10000540.g ID=Lus10000540.BGIv1.0 annot-version=v1.0 ATGGGTCGTTCTCGCGGCAATTTTCATTCAGTTGATGAAGACCCCACTCAGAGATCAAGGAGGAAGAAGAATGCTTCTACTGGTGAGAATCTAGAATCCT CCTCTACAGGGCAAGTTACAGGTGAAGGGAAAAGGGCATTGTACCATTGCAATTACTGCAACAAAGATATAACCGGGAAGATCCGAATCAAGTGTGCTAT GTGCCCTGATTTCGATCTGTGTATCGAGTGTTTTTCTGTTGGAGCTGAGATGACACCACATAAAAGCAGTCACCCTTATAGGGTTATGGATAATTTGTCT TTCCCACTTATATGTCCCGACTGGAATGCGGATGATGAAATTCTGCTTCTGGAGGGGATTGAAATGTATGGCATGGGGAACTGGACAGAAGTTGCTGAGC ATGTAGGAACAAAGAGCAAAGACACGTGCATTGAACATTACAACAATGTTTATATGAACTCCCCTTACTTCCCTCTCCCGGACATGTCCCATGTTGTTGG AAAGAATAGAAAAGAGCTTCTTGCCATGGCAAAAGGGTCTTCCATGCACGGGGAGCACAATTTGAAGGAAGAATCTCCATTTTCTCCCACTAGAGTCAAA ACTGAAGGTGGCTACTCTGGACGTTTATTGTCTCCATTAAATGCTGGTGATTTTAGTATCTATGAAGCTACTGATGTGGAGTCAGGGGGGCGTCCCACAA GTGCAACGACTGCTGGTAAAAAGACATCTGGCATGGCTCGGGTTAAAGATAGCCCAAATAACGTCAAAGTGGAAGATCCTCCCATAGAAAGGAGTTCCAA AGGGAAGAAACCAAATTGTGCAGCTGACGGTCCATCTTTAGTTGACTTGAGTGGTTACAACTCTAAAAGACGGGAGTTTGATCCAGAGTATGATAATGAT GCTGAGCAGCTACTAGCCGAGATGGAGTTTAAAGATAACGACACGGAGGAAGAGCGGGAGTTAAAGTTACGTGTTTTGCGTATTTATGGAAAGAGGCTTG ATGAAAGAAAGCGTAGAAAGGATTTCATCTTGGAAAGAAACTTACTGTATCCTAATCCTTTCGAGAGGGACTTGTCCCCTGATGAGAGGATAATCTGCCG ACGTTATGACATATTTATGAGATTTCATTCTAAGGAAGAACACGAGGAATTGCTCAGGACAGTTATCACTGAGCACCGAACTCTAAAAAAAATCCAAGAA TTGAAGGAAGCACGAACTGCTGGCTGCCGGACATCGATCGAGGCAGATAGATACCTTGAACTTAAACGGAAAAGGGAAGCAGAGGAGAGTTCTCGTCGAG TAAAAGAAGGCTCACAAGGCGGTATGGCTTCCGAACCGATAGGCAAGGATTCAAATGCAAGACCTGCAGGGCAAGGGTCGTCGAGCTATGTGAACGATCT GGACATCACAGCATTTTTCGACACCCAGTTGCTGTCTGAAGCTGAGAAACGCCTATGCTTCGAGATTAGGTTGCCTCCGCCACTCTAA
AA sequence Show only first row Show all	>Lus10000540 pacid=23160074 polypeptide=Lus10000540 locus=Lus10000540.g ID=Lus10000540.BGIv1.0 annot-version=v1.0 MGRSRGNFHSVDEDPTQRSRRKKNASTGENLESSSTGQVTGEGKRALYHCNYCNKDITGKIRIKCAMCPDFDLCIECFSVGAEMTPHKSSHPYRVMDNLS FPLICPDWNADDEILLLEGIEMYGMGNWTEVAEHVGTKSKDTCIEHYNNVYMNSPYFPLPDMSHVVGKNRKELLAMAKGSSMHGEHNLKEESPFSPTRVK TEGGYSGRLLSPLNAGDFSIYEATDVESGGRPTSATTAGKKTSGMARVKDSPNNVKVEDPPIERSSKGKKPNCAADGPSLVDLSGYNSKRREFDPEYDND AEQLLAEMEFKDNDTEEERELKLRVLRIYGKRLDERKRRKDFILERNLLYPNPFERDLSPDERIICRRYDIFMRFHSKEEHEELLRTVITEHRTLKKIQE LKEARTAGCRTSIEADRYLELKRKREAEESSRRVKEGSQGGMASEPIGKDSNARPAGQGSSSYVNDLDITAFFDTQLLSEAEKRLCFEIRLPPPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07740		HXA2, HXA02, HA...	homolog of yeast ADA2 2A (.1.2...		Lus10000540 [exp]	0	1
AT5G55760		SRT1	sirtuin 1 (.1)		Lus10016619 [exp]	1.4	0.8836
AT3G49410			Transcription factor IIIC, sub...		Lus10042709 [exp]	3.7	0.8409
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Lus10012457 [exp]	4.2	0.8189
AT1G32070		ATNSI	nuclear shuttle interacting (....		Lus10035604 [exp]	5.3	0.8647
AT2G04560		AtLpxB	lipid X B, transferases, trans...		Lus10029959 [exp]	5.7	0.8199
AT2G03620		AtMRS2-5, AtMGT...	magnesium transporter 3 (.1.2)		Lus10037081 [exp]	6.3	0.8488
AT1G32070		ATNSI	nuclear shuttle interacting (....		Lus10003245 [exp]	6.7	0.8636
AT4G21190		EMB1417	embryo defective 1417, Pentatr...		Lus10027535 [exp]	6.9	0.8522
AT3G55460		SCL30, At-SCL30	SC35-like splicing factor 30 (...		Lus10002699 [exp]	8.1	0.8238
AT4G35520		MLH3, ATMLH3	MUTL protein homolog 3 (.1)		Lus10035985 [exp]	8.1	0.8135

Compare expression of checked genes

Lus10000540 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.