Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39780 154 / 3e-46 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G78080 145 / 5e-42 AP2_ERF CAF1, RAP2.4, WIND1 wound induced dedifferentiation 1, related to AP2 4 (.1) AT1G22190 137 / 1e-39 AP2_ERF RAP2.4 related to AP2 4, Integrase-type DNA-binding superfamily protein (.1) AT2G22200 133 / 3e-38 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G65130 130 / 7e-37 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G36060 105 / 4e-27 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT4G13620 101 / 5e-25 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G64380 91 / 2e-21 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G20880 90 / 4e-21 AP2_ERF AtERF53 ERF domain 53, Integrase-type DNA-binding superfamily protein (.1) AT4G28140 80 / 1e-17 AP2_ERF Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019665 [exp] 332 / 1e-116 AT4G39780 209 / 1e-67 Integrase-type DNA-binding superfamily protein (.1) Lus10016801 [exp] 174 / 3e-53 AT1G78080 245 / 3e-79 wound induced dedifferentiation 1, related to AP2 4 (.1) Lus10022497 [exp] 167 / 1e-50 AT1G78080 248 / 2e-80 wound induced dedifferentiation 1, related to AP2 4 (.1) Lus10033463 [exp] 139 / 9e-40 AT1G78080 248 / 2e-80 wound induced dedifferentiation 1, related to AP2 4 (.1) Lus10020913 [exp] 134 / 8e-38 AT1G78080 246 / 2e-79 wound induced dedifferentiation 1, related to AP2 4 (.1) Lus10003889 [exp] 102 / 7e-26 AT1G64380 197 / 4e-61 Integrase-type DNA-binding superfamily protein (.1) Lus10001898 [exp] 101 / 2e-25 AT1G64380 210 / 1e-65 Integrase-type DNA-binding superfamily protein (.1) Lus10016669 [exp] 92 / 4e-22 AT4G13620 184 / 2e-55 Integrase-type DNA-binding superfamily protein (.1) Lus10007124 [exp] 91 / 7e-22 AT4G13620 181 / 1e-54 Integrase-type DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G077300 [exp] 160 / 2e-47 AT1G78080 207 / 7e-64 wound induced dedifferentiation 1, related to AP2 4 (.1) Potri.002G094200 [exp] 154 / 1e-45 AT1G78080 228 / 1e-72 wound induced dedifferentiation 1, related to AP2 4 (.1) Potri.007G090600 [exp] 153 / 1e-44 AT1G78080 205 / 4e-63 wound induced dedifferentiation 1, related to AP2 4 (.1) Potri.005G168700 [exp] 152 / 2e-44 AT1G78080 197 / 3e-60 wound induced dedifferentiation 1, related to AP2 4 (.1) Potri.017G055400 [exp] 103 / 1e-25 AT4G13620 216 / 9e-66 Integrase-type DNA-binding superfamily protein (.1) Potri.001G315300 [exp] 100 / 2e-24 AT4G13620 194 / 3e-57 Integrase-type DNA-binding superfamily protein (.1) Potri.001G092400 [exp] 96 / 3e-23 AT1G64380 181 / 1e-54 Integrase-type DNA-binding superfamily protein (.1) Potri.003G139300 [exp] 90 / 3e-21 AT1G64380 173 / 1e-51 Integrase-type DNA-binding superfamily protein (.1) Potri.013G135600 [exp] 91 / 6e-21 AT2G20880 180 / 2e-52 ERF domain 53, Integrase-type DNA-binding superfamily protein (.1) Potri.019G102200 [exp] 88 / 3e-20 AT2G20880 195 / 2e-58 ERF domain 53, Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10000582 pacid=23154168 polypeptide=Lus10000582 locus=Lus10000582.g ID=Lus10000582.BGIv1.0 annot-version=v1.0 ATGGCTGCAGAGCTAATGGAGGCACTAGAACCTTTCATGAGATCCCCACCTTCTTCTTGTTTTTCCCTAAACCAGCTGAATCCATCTCAAATCCTCCAGA TCCAAGCTCAGCTCCAAACCCAGATGACCAATTACAAAACCCCCCTGGCAGTTACTCCTTCCCCGATGAAGCGGTCCGCGGTTAAGCCGCCGACGAAGCT TTACCGGGGAGTGAGGCAGCGCCACTGGGGGAAATGGGTAGCCGAAATCCGGCTACCCAAGAACCGAACCAGGCTCTGGCTCGGAACCTTCGAAACCGCC GAGGAAGCCGCTCTCGCTTACGACCGAGCCGCTTACATGCTCCGAGGCGATTTCGCTCGGCTCAACTTCCCGCAGATGGTTCACACCGGCGGGCAGTTCA TCAAAACCCTGCATTCTTCCGTCGAGGCTAAGCTCCAGGCTATATGCCAGAGCTTGGAGGAGAAGAAGAAAACAGGGGAGGTGGAAAACAGGGCATCCCC TGTTAAAGTTGAGGAAGCAGAGGTTTCTTCTTCTTCTTCGAGTTCGAATTCGAATTCCGAGATTTCGTTCCTCGACTTCACCGAGACGGAATCGAGATGG GGAATCGGAGAGACTTTCGGGTTGGAGAAGTTTCCTTCTGCAGAGATTGATTGGGCTGCTATCTGA
AA sequence Show only first row Show all	>Lus10000582 pacid=23154168 polypeptide=Lus10000582 locus=Lus10000582.g ID=Lus10000582.BGIv1.0 annot-version=v1.0 MAAELMEALEPFMRSPPSSCFSLNQLNPSQILQIQAQLQTQMTNYKTPLAVTPSPMKRSAVKPPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFETA EEAALAYDRAAYMLRGDFARLNFPQMVHTGGQFIKTLHSSVEAKLQAICQSLEEKKKTGEVENRASPVKVEEAEVSSSSSSSNSNSEISFLDFTETESRW GIGETFGLEKFPSAEIDWAAI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39780	AP2_ERF		Integrase-type DNA-binding sup...		Lus10000582 [exp]	0	1
AT4G39780	AP2_ERF		Integrase-type DNA-binding sup...		Lus10019665 [exp]	3.5	0.9553
AT4G31830			unknown protein		Lus10010682 [exp]	10.2	0.9216
					Lus10026056 [exp]	11.3	0.9311
					Lus10012304 [exp]	15.2	0.9152
AT1G12110		CHL1-1, CHL1, B...	CHLORINA 1, ARABIDOPSIS THALIA...		Lus10024614 [exp]	15.8	0.9261
AT4G35783		RTFL6, DVL17	DEVIL 17, ROTUNDIFOLIA like 6 ...		Lus10041846 [exp]	16.0	0.8871
AT4G09460	MYB	ATMYB6, ATMYB8	myb domain protein 6 (.1)		Lus10000411 [exp]	23.0	0.9140
AT2G01980		ATSOS1, SOS1, A...	ARABIDOPSIS SALT OVERLY SENSIT...		Lus10039133 [exp]	23.3	0.8996
AT4G33820			Glycosyl hydrolase superfamily...		Lus10014646 [exp]	23.4	0.8692
AT4G03965			RING/U-box superfamily protein...		Lus10015152 [exp]	23.5	0.9252

Compare expression of checked genes

Lus10000582 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.