Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 192 / 3e-50 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27170 166 / 8e-42 transmembrane receptors;ATP binding (.1.2) AT1G27180 150 / 8e-37 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G69550 149 / 2e-36 disease resistance protein (TIR-NBS-LRR class) (.1) AT5G17680 143 / 1e-34 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G46260 136 / 1e-32 disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G41540 135 / 2e-32 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G11170 135 / 3e-32 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G49140 129 / 2e-30 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G46270 128 / 4e-30 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008526 [exp] 1107 / 0 AT5G36930 361 / 5e-106 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10008519 [exp] 1056 / 0 AT1G27180 344 / 2e-98 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10004719 [exp] 1011 / 0 AT5G36930 384 / 3e-113 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10002249 [exp] 964 / 0 AT5G36930 286 / 2e-80 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10002247 [exp] 916 / 0 AT5G36930 363 / 1e-108 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007790 [exp] 851 / 0 AT5G36930 343 / 4e-99 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10000331 [exp] 687 / 0 AT5G36930 217 / 1e-57 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007811 [exp] 584 / 0 AT5G36930 376 / 1e-110 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007809 [exp] 556 / 0 AT5G36930 239 / 5e-65 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G004599 [exp] 206 / 6e-55 AT5G36930 627 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.005G206400 [exp] 200 / 2e-53 AT5G36930 587 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.007G142600 [exp] 199 / 6e-53 AT5G36930 535 / 5e-173 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G001602 [exp] 199 / 8e-53 AT5G36930 778 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.007G143300 [exp] 198 / 2e-52 AT5G36930 519 / 2e-162 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.002G056100 [exp] 197 / 4e-52 AT5G36930 591 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G007884 [exp] 189 / 1e-49 AT5G36930 654 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001933 [exp] 189 / 1e-49 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.003G014200 [exp] 189 / 2e-49 AT5G36930 673 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002066 [exp] 189 / 2e-49 AT5G36930 631 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10000738 pacid=23140533 polypeptide=Lus10000738 locus=Lus10000738.g ID=Lus10000738.BGIv1.0 annot-version=v1.0 ATGGATTCTGTTGGATTTACTAATGATAGTGGCGGAAGGAAGATGATAAAGGAGAGAGTTTCGAAGTCCAAAATTCTTGTCGTTCTCGATGATGTTGATG AGAAGTTTAAATTTGAAGATATACTCGGCTGTCCTAAAGATTTTGATTCTAGGAGTCGATTCATCATTACTTCAAGATATCAAAATGTCTTGGGTCCTTT GAATGAGAATCAATGCACGTTGTATGAAGTTGGATCGATGAGCCAACCACATTCGCTTGAACTCTTCTCCAAACATGCGTTCAAAAAGAATAAGCCTCCA TCGGATTATGAGACTCTAGCAAATGACGTCGTATATACTGCAGGAGGACTTCCATTGACTCTGAAGGTTATAGGTTCACTTTTATTCAGACAAGAGATTG GGGTTTGGGAAGATACGTTGGTACAGTTGCGTAAAGCACTTAACCTTGATGAGGTTTATGATAGGCTAAAACTAAGTTTCGATGCGTTGAAGGCGGAGGC AAAAGAGATTTTCTTGGATATAGCTTGCTTCTTCATCGGAACAAACAAAGAAATGCCATATTACATGTGGAGCGACTGCAATTTTTTTCCTAAAAGTAAT ATTATTTTTCTCATTCAAAGATGTATGATACAAGTTGGAGATGATGGGGTGTTTCAGATGCACGACCAACTTAGAGATATGGGCAGAGAAATTGTAAGAA GAGAGGATGTGGAGCGGTCGTGGAAGAGAAGTAGGATATGGTCGAGCCAAGAAGGAATTGATATGTTGTTGAACAAAAAGGGATCAAGTCAGGTAAAAGC AATTAGCATACAGTCGGCCTGGGATTATGACAAGTTTAAGAGCGAATGTTTCTTGAATTTGTCAGAGTTGAGATACTTTTATGTAGGATCAAGCATATTG CTTACCGGAGATTTCAATAATCTTCTCCCGAATTTGAGGTGGCTTCAGTTGCACGAGTACAAACAATATAGAGAGGATGATCCTTTGACCAATTTTACTA TGAAAAAATTGGTAATTCTTGTTTTGGCCAATAGCGGAAGAGAGTGGAGCCATATGATGAAGATGGCTCCCAGGCTGAAAGTTGTACAACTTTCTTTTAT CAATTCGGTCCCCGAAAGACTGTCTGTCTGCTGGCGCTTCCCCAAAAGCATTGAGGTATTATCCATGTTTAGGATGAAAATGGTGGAACTTGATATTGGG GAGTTAAAGAAGCTAAAGACGTTGGATCTGGGTTTCAGTAAAATACAAAAAATAAGTGGGGGAACCTTTGGTATGTTGAAGGGACTCATACAGCTTCATC TCAACTACATCAAGTGTACAAATTTGAGAGAAGTAGTTGCCGATATTGGACAACTTTCGTCTCTCAAAGTCTTGAAAACAGAAGGAGCTAAGGAGGTCCA GTTTGAATTTCCATTAGGTTTGAAGGAGTTATCCACTTCATCTCGGATACCGAATCTTTCACGGTTGTTGGATTTGGAGGTACTGAAGGTTTATGGTTGT GACGGAATCGACATCCCTCCTGCTAACAGTACTGAAGATGAAGGTAGCGTGTGGTGGAAGGTATCCAAGTTGAAGTCTTTGAAACTCTATCGCACAAGAA TCAATATAAACGTTGTGGATGCTTCTTCCGGTGGTCGTTATTTACTACCATCGTCGCTAACCTCTCTCGAAATTAGTTCGCCTATTGAACGAACGTGGCT TCCAGGAATAGAGAACTTGGAGAATTTGACTTCGCTGGAAGTCAACGACATCTTCCAAACTCTTGGAGGTGATTTGGATGGGCTACAAGGGTTGAGATCG TTGGAAACTCTTAGCATTCGGAAAGTAAATGGTTTAGTTAGGATCAAAGGGCTTAAGGATCTCTTCTGTTCTTCTACCTGCAAGTTGCGGAAATTATATA TTAGAGCATGCCATGACCTCACTGAGATACTCCCATGCGAACTCGACGACCAAACAGTTGCAGCAGTCCCCTCTTTGGTAGAACTGAGCATTAGGGATTG TCCACGGCTGGAGGTTGGTCTGATGATACAATCTCTTCCAAAGTTCCCAATGCTAAATCATTTGACTCTCTCGATGGTAAATATCACTAAGGAGAAGGAG CTGGAGGTGCTTGGATCCCTAGAAGAGTTGGTTGATTTGCGTTTAGTGTTAGATGATACATGTTCCAGCTTAGAGAAGATAGCTTCCTTGTCAAAGCTGC AACAGTTAACTACACTCCGAGTAAGCGTGTCGAGTTTGCGGGAGATTGAAGGGCTTGCAGAGTTGAAGTCTTTACAAGAATTGGATTTGCAAGGTTGTAG GTCGTTGGAAAGACTATGGCCTAATGGACAGAAACTCGATAATAATAAGCTTGTGCGGATAAACATCAGAGGTTGCAGAAGCTTGAGTGTAGATCATCTC TCTGCACTCAAGACCACTCTACCGCCCAATGTGAAGATAACATGGCCGCCCCATGTGAACTTGACGACCAAACAGTAG
AA sequence Show only first row Show all	>Lus10000738 pacid=23140533 polypeptide=Lus10000738 locus=Lus10000738.g ID=Lus10000738.BGIv1.0 annot-version=v1.0 MDSVGFTNDSGGRKMIKERVSKSKILVVLDDVDEKFKFEDILGCPKDFDSRSRFIITSRYQNVLGPLNENQCTLYEVGSMSQPHSLELFSKHAFKKNKPP SDYETLANDVVYTAGGLPLTLKVIGSLLFRQEIGVWEDTLVQLRKALNLDEVYDRLKLSFDALKAEAKEIFLDIACFFIGTNKEMPYYMWSDCNFFPKSN IIFLIQRCMIQVGDDGVFQMHDQLRDMGREIVRREDVERSWKRSRIWSSQEGIDMLLNKKGSSQVKAISIQSAWDYDKFKSECFLNLSELRYFYVGSSIL LTGDFNNLLPNLRWLQLHEYKQYREDDPLTNFTMKKLVILVLANSGREWSHMMKMAPRLKVVQLSFINSVPERLSVCWRFPKSIEVLSMFRMKMVELDIG ELKKLKTLDLGFSKIQKISGGTFGMLKGLIQLHLNYIKCTNLREVVADIGQLSSLKVLKTEGAKEVQFEFPLGLKELSTSSRIPNLSRLLDLEVLKVYGC DGIDIPPANSTEDEGSVWWKVSKLKSLKLYRTRININVVDASSGGRYLLPSSLTSLEISSPIERTWLPGIENLENLTSLEVNDIFQTLGGDLDGLQGLRS LETLSIRKVNGLVRIKGLKDLFCSSTCKLRKLYIRACHDLTEILPCELDDQTVAAVPSLVELSIRDCPRLEVGLMIQSLPKFPMLNHLTLSMVNITKEKE LEVLGSLEELVDLRLVLDDTCSSLEKIASLSKLQQLTTLRVSVSSLREIEGLAELKSLQELDLQGCRSLERLWPNGQKLDNNKLVRINIRGCRSLSVDHL SALKTTLPPNVKITWPPHVNLTTKQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36930			Disease resistance protein (TI...		Lus10000738 [exp]	0	1
AT1G73390			Endosomal targeting BRO1-like ...		Lus10026368 [exp]	1.0	0.8747
AT4G01995			unknown protein		Lus10016264 [exp]	2.8	0.8228
AT1G03260			SNARE associated Golgi protein...		Lus10012371 [exp]	3.9	0.7990
AT3G59570			Ypt/Rab-GAP domain of gyp1p su...		Lus10022963 [exp]	6.2	0.7783
AT5G52880			F-box family protein (.1)		Lus10027547 [exp]	6.9	0.7980
AT4G12010			Disease resistance protein (TI...		Lus10015648 [exp]	7.9	0.7974
AT2G26600			Glycosyl hydrolase superfamily...		Lus10038099 [exp]	8.1	0.7955
AT1G55730		ATCAX5	cation exchanger 5 (.1.2)		Lus10009430 [exp]	11.0	0.8181
AT4G36400		D2HGDH	D-2-hydroxyglutarate dehydroge...		Lus10041792 [exp]	13.6	0.7997
AT5G40060			Disease resistance protein (NB...		Lus10002248 [exp]	16.7	0.7965

Compare expression of checked genes

Lus10000738 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.