Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23630 699 / 0 SKS16 SKU5 similar 16 (.1) AT4G37160 696 / 0 SKS15 SKU5 similar 15 (.1) AT5G66920 614 / 0 SKS17 SKU5 similar 17 (.1) AT4G22010 558 / 0 SKS4 SKU5 similar 4 (.1) AT1G41830 558 / 0 SKS6 SKU5 SIMILAR 6, SKU5-similar 6 (.1) AT1G21860 556 / 0 SKS7 SKU5 similar 7 (.1) AT1G76160 552 / 0 SKS5 SKU5 similar 5 (.1) AT1G21850 541 / 0 SKS8 SKU5 similar 8 (.1) AT4G38420 515 / 1e-176 SKS9 SKU5 similar 9 (.1) AT1G55570 496 / 5e-169 SKS12 SKU5 similar 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019642 [exp] 993 / 0 AT4G37160 751 / 0.0 SKU5 similar 15 (.1) Lus10016770 [exp] 625 / 0 AT5G66920 837 / 0.0 SKU5 similar 17 (.1) Lus10022465 [exp] 617 / 0 AT5G66920 829 / 0.0 SKU5 similar 17 (.1) Lus10020022 [exp] 565 / 0 AT4G22010 895 / 0.0 SKU5 similar 4 (.1) Lus10015545 [exp] 565 / 0 AT4G22010 889 / 0.0 SKU5 similar 4 (.1) Lus10030045 [exp] 555 / 0 AT1G76160 796 / 0.0 SKU5 similar 5 (.1) Lus10035282 [exp] 551 / 0 AT1G76160 798 / 0.0 SKU5 similar 5 (.1) Lus10005649 [exp] 538 / 0 AT1G76160 889 / 0.0 SKU5 similar 5 (.1) Lus10034560 [exp] 529 / 0 AT1G76160 894 / 0.0 SKU5 similar 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G038200 [exp] 783 / 0 AT4G37160 771 / 0.0 SKU5 similar 15 (.1) Potri.007G038300 [exp] 635 / 0 AT5G66920 822 / 0.0 SKU5 similar 17 (.1) Potri.002G227600 [exp] 566 / 0 AT1G76160 794 / 0.0 SKU5 similar 5 (.1) Potri.014G154500 [exp] 565 / 0 AT4G22010 780 / 0.0 SKU5 similar 4 (.1) Potri.004G180500 [exp] 560 / 0 AT1G76160 880 / 0.0 SKU5 similar 5 (.1) Potri.005G247700 [exp] 558 / 0 AT1G76160 878 / 0.0 SKU5 similar 5 (.1) Potri.004G010100 [exp] 555 / 0 AT4G22010 844 / 0.0 SKU5 similar 4 (.1) Potri.002G013700 [exp] 550 / 0 AT1G76160 902 / 0.0 SKU5 similar 5 (.1) Potri.001G000500 [exp] 509 / 3e-174 AT1G55570 853 / 0.0 SKU5 similar 12 (.1) Potri.001G000600 [exp] 499 / 2e-170 AT1G55570 850 / 0.0 SKU5 similar 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF00394 [flax] [poplar] Cu-oxidase Multicopper oxidase CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0026 [flax] [poplar] CU_oxidase PF07731 [flax] [poplar] Cu-oxidase_2 Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07732 [flax] [poplar] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Lus10000837 pacid=23148148 polypeptide=Lus10000837 locus=Lus10000837.g ID=Lus10000837.BGIv1.0 annot-version=v1.0 ATGGATGCTTCTATTGATGAGAACGTTCAAAGGGAAATCATTAATCATAGGTCTCTGAGGCATCCCAACATTGTGAGGTTTAAAGAGGTCATCCTGACAC CTACTCATCTGGCAATCGTTATGGAATATGCATCCGGTGGAGAGCTCTTTGAGCGAATATCCAGTGCTGGCCGTTTCGGTGAGGATGAGATTGATGAGAA CGTTCAAAGGGAAATCATTAATCATAGGTCTCTGAGGCATCCCAACATTGTGAGGTTTAAAGAGGTCATCCTGACACCTACTCATCTGGCAATCGTTATG GAATATGCATCCGGTGGAGAGCTCTTTGAGCGAATATCCAGTGCTGGCCGTTTCGGTGAGGATGAGGCTCGCTTTTTCTTCCAACAACTGATTTCCGGGG TTAGCTATTGCCATGCTATGCAAGTGTGTCACCGTGATTTGAAGTTGGAGAATACATTGTTAGATGGAAGCCCTGCTCCTCGGTTAAAAATTTGTGATTT TGGGTACTCAAAGTCATCGGTGCTTCATTCACAACCAAAGTCTACTGTGGGAACTCCTGCTTATATTGCTCCTGAAGTTCTGTTAAGGCAAGAATATGAT GGAAAGGGTATTCTCATCAATGGACAGTTCCCTGGCCCGCCGATCAATGCTGTGACAAATGATAACATCCTTGTTAATGTCATTAACAAGTTGGACGTAC CATTCCTAATAACATGGAATGGGATTAAACAAAGGAGAACTTCATGGCAAGATGGAGTCCTTGGGACACAATGTCCAATCCCTCCAAACTCCAACTGGAC CTACAAGTTCCAAGTGAAGGATCAGATTGGAACCTTTAACTACTTCCCTTCGATCGGATTGCAAAGAGCTGCTGGAGGGTTTGGAGCTTTCAACGTTGAC CAGAGATCAGTGATTTTCAAACCTTACCCCATACCTGTTGAAGAGTTTACCTTACTTATCAGTGACTGGTATAAGACTGATTTCAAGGTGTTGGAGCAGA AGTTGGACCAGGGCATTGCTCTTCCTCTTCCTGATGGCCTTCTGATAAATGGTCTGCCTAATGGCAAGGCTGTGTTCACCGGAGAAAAAGACAAGCTTTA CAGATTCAGGATATCCAACGTGGGTATTGCAACGTCAATTAACTTCAGAATCCAGGGCCACTCAATGTTCCTAATTGAAGTTGAAGGTGCTCATACATTG CAAGAAGTTTACAAGTCACTTGACATTCATTGTGGCCAATCTGTGTCCGTCTTGGTCAGATTTCACGCACCGGTAACCAAAGACTACTTCATCGTTGCTT CCACGCGCTTCACCAAGCCGATCCTCACCACCACTGCAATTCTCAAGTATGCTGGCTCCACTACTCCAGCTTCTCTGCCATTGCCTATTGGACCAACGTA CCACCTCCATTGGTCTATGAAGCAAGCCAGGACCTTAAGGTTGAATTTGACAGCAAATGCAGCCAGACCAAACCCACAAGGGTCGTTCCACTACGGAACG ATCCAAGTAATGAAGACCATCTTCCTAACTAACACGGCATCAAAGATCAACGGAAAGCTGCGATATGCTGTTAACAGCGTCTCTCATGTAGATCCACCCA CGCCATTGAAGCTTGCTGATTGGTACAATATCCCCGGCGTCTACAAACTGAACTCTGTTTCTGATACACCCACCAACACAACTCCTATCCTCGCACCTGC AGTCCTCGGATTCGAGCTCCATGACTACGTGGAGATTATCTTCCAGAACACTGAAAACACTGTCCAGTCCTGGCACATGGATGGGTCCAGCTTCTACATT GTTGGATATGGAAATGGACCATGGACACCTAAGATGAGGAGGAGGTACAATCTAGTTGATGGCGTTCCAAGACACACTGTCCAGGTGTATCCAACGTCGT GGAGTGCGATCCTCGTGTCGCTGGACAACAAAGGGATGTGGAACTTGAGGTCTGCAATCTGGGCGAAGAGATACCTTGGACAGCAGCTGTACATGAGAGT CTGGAACGATGAGCAGAGCCTCTTCACCGAGACCAATCCGCCCCCAAATGTTCTGTTCTGTGGTTCTGCTAAACCGTAA
AA sequence Show only first row Show all	>Lus10000837 pacid=23148148 polypeptide=Lus10000837 locus=Lus10000837.g ID=Lus10000837.BGIv1.0 annot-version=v1.0 MDASIDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGELFERISSAGRFGEDEIDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIVM EYASGGELFERISSAGRFGEDEARFFFQQLISGVSYCHAMQVCHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLRQEYD GKGILINGQFPGPPINAVTNDNILVNVINKLDVPFLITWNGIKQRRTSWQDGVLGTQCPIPPNSNWTYKFQVKDQIGTFNYFPSIGLQRAAGGFGAFNVD QRSVIFKPYPIPVEEFTLLISDWYKTDFKVLEQKLDQGIALPLPDGLLINGLPNGKAVFTGEKDKLYRFRISNVGIATSINFRIQGHSMFLIEVEGAHTL QEVYKSLDIHCGQSVSVLVRFHAPVTKDYFIVASTRFTKPILTTTAILKYAGSTTPASLPLPIGPTYHLHWSMKQARTLRLNLTANAARPNPQGSFHYGT IQVMKTIFLTNTASKINGKLRYAVNSVSHVDPPTPLKLADWYNIPGVYKLNSVSDTPTNTTPILAPAVLGFELHDYVEIIFQNTENTVQSWHMDGSSFYI VGYGNGPWTPKMRRRYNLVDGVPRHTVQVYPTSWSAILVSLDNKGMWNLRSAIWAKRYLGQQLYMRVWNDEQSLFTETNPPPNVLFCGSAKP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23630		SKS16	SKU5 similar 16 (.1)		Lus10000837 [exp]	0	1
AT5G51490			Plant invertase/pectin methyle...		Lus10038919 [exp]	2.2	0.9717
AT5G51310			2-oxoglutarate (2OG) and Fe(II...		Lus10009025 [exp]	2.8	0.9296
AT4G33590			unknown protein		Lus10001351 [exp]	9.8	0.8771
AT1G80530			Major facilitator superfamily ...		Lus10017480 [exp]	10.1	0.9452
AT5G63180			Pectin lyase-like superfamily ...		Lus10036946 [exp]	11.4	0.9344
AT4G12470		AZI1	azelaic acid induced 1 (.1)		Lus10032261 [exp]	11.5	0.9304
AT4G37160		SKS15	SKU5 similar 15 (.1)		Lus10019642 [exp]	12.8	0.9438
AT2G43870			Pectin lyase-like superfamily ...		Lus10022530 [exp]	14.1	0.9416
AT3G08030			Protein of unknown function, D...		Lus10029503 [exp]	16.0	0.9087
					Lus10004308 [exp]	16.6	0.8656

Compare expression of checked genes

Lus10000837 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.