Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39830 755 / 0 Cupredoxin superfamily protein (.1) AT5G21100 572 / 0 Plant L-ascorbate oxidase (.1) AT5G21105 570 / 0 Plant L-ascorbate oxidase (.1.2.3) AT5G05390 278 / 2e-86 LAC12 laccase 12 (.1) AT5G03260 268 / 1e-82 LAC11 laccase 11 (.1) AT2G30210 268 / 2e-82 LAC3 laccase 3 (.1) AT1G18140 259 / 5e-79 LAC1, ATLAC1 laccase 1 (.1) AT5G07130 256 / 6e-78 LAC13 laccase 13 (.1) AT5G09360 256 / 9e-78 LAC14 laccase 14 (.1) AT2G40370 254 / 4e-77 LAC5 laccase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009603 [exp] 1085 / 0 AT4G39830 754 / 0.0 Cupredoxin superfamily protein (.1) Lus10022504 [exp] 776 / 0 AT4G39830 828 / 0.0 Cupredoxin superfamily protein (.1) Lus10016808 [exp] 774 / 0 AT4G39830 824 / 0.0 Cupredoxin superfamily protein (.1) Lus10025538 [exp] 574 / 0 AT5G21105 792 / 0.0 Plant L-ascorbate oxidase (.1.2.3) Lus10026753 [exp] 570 / 0 AT5G21105 787 / 0.0 Plant L-ascorbate oxidase (.1.2.3) Lus10036957 [exp] 287 / 2e-95 AT4G39830 213 / 3e-67 Cupredoxin superfamily protein (.1) Lus10023189 [exp] 288 / 6e-90 AT5G03260 930 / 0.0 laccase 11 (.1) Lus10026512 [exp] 285 / 5e-89 AT5G03260 919 / 0.0 laccase 11 (.1) Lus10002227 [exp] 283 / 2e-88 AT5G03260 926 / 0.0 laccase 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G171700 [exp] 841 / 0 AT4G39830 799 / 0.0 Cupredoxin superfamily protein (.1) Potri.007G088222 [exp] 782 / 0 AT4G39830 847 / 0.0 Cupredoxin superfamily protein (.1) Potri.007G088358 [exp] 772 / 0 AT4G39830 831 / 0.0 Cupredoxin superfamily protein (.1) Potri.005G079400 [exp] 769 / 0 AT4G39830 828 / 0.0 Cupredoxin superfamily protein (.1) Potri.001G454700 [exp] 659 / 0 AT4G39830 619 / 0.0 Cupredoxin superfamily protein (.1) Potri.009G159700 [exp] 574 / 0 AT5G21105 760 / 0.0 Plant L-ascorbate oxidase (.1.2.3) Potri.001G219300 [exp] 571 / 0 AT5G21105 758 / 0.0 Plant L-ascorbate oxidase (.1.2.3) Potri.007G088290 [exp] 324 / 3e-108 AT4G39830 363 / 1e-123 Cupredoxin superfamily protein (.1) Potri.006G097000 [exp] 276 / 1e-85 AT2G38080 914 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Potri.008G073700 [exp] 276 / 2e-85 AT2G40370 946 / 0.0 laccase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF00394 [flax] [poplar] Cu-oxidase Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07731 [flax] [poplar] Cu-oxidase_2 Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07732 [flax] [poplar] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Lus10000871 pacid=23158799 polypeptide=Lus10000871 locus=Lus10000871.g ID=Lus10000871.BGIv1.0 annot-version=v1.0 ATGATCGAAGCCAAAACCCACCTCCACAAATGGGACGTTAGATACGAGTACAAGTCACCCGATTGCTACAAGAAGCTATCCATTACCATCAACGGCATGA CTCCCGGGCCAACAATCCGTGCCCAACAAGGAGACACGATCATTGTCGTGGTTACCAACGGATTAGGCACGGAGAATGTTGCTATTCACTGGCATGGCAT CCGACAGTTCGGCACCCCTTGGAGCGATGGTGCCGAAGGGGTCACGCAATGTCCCGTCCTGCCTGGCGAATCGTTCACTTATAGATTCGTCGTGGACAAG GCTGGGACGTTCATGTACCATGGTCATTACGGGATGCAGAGGTCGGCCGGGCTCAATGGGATGATTGTTGTTTCTTCGAGGTTTCGCCCGGTCGAGCCGT TCTCGTATGACCATGATCAATCAATGTTGTTGACCGATTGGTATCATGCGTCGACTTTTGAGCAGGTTGCGGGTCTTTCATCTGTTCCCTTTGTTTTCGT CGGGGAGCCACAGTCGCTTCTAATAAACGGCAGAGGGAAATACAACTGCTCTCAAGTGCCGCCGGCGGCCAACGGATCAACCAGCGTTTGCGATCCGACG AACCCCAGCTGCGATCCGTTTACCCTAACTGTCATTCCGGGGCAGACCTATCGCATCAGGATCGGCAGCTTAACTTCTCTATCTACTCTTAGTTTCCAGA TTGAGGGTCACAAGATGACTGTGGTGGAAGCCGACGGGAACTACGTGGAACCATTCGAGACGGAGAACCTCTACGTCTACTCTGGCGAGACCTACTCCGT GTTGGTGAAAGCCGATCAGCCTCCGACCAGGAATTACTGGATCACCACGAGCGTCGTCGCTCGGAAACCTTCAACTCCGGAGGGGATCGCAATTCTCAAC TACTACCCGAACCACCCGCGGCGTCGTCCTCATACGCTCCCACCGGCTGGACCTCAATGGAACGACACCGGTTCACGACTGGAGCAGAGTCGGGCATTTA AGGCCCGGATAGGCTATGTCCATGAACCGCCTTCGAAACCGGACCGGGTCATCCAGCTACTCAACACACAGAACAAGATTGGCGGGAAATTCAAATGGGC GTTGAACAATCTGTCCCTTGCCCTCCCAACGACTCCTTATTTGGTCGCCCTGAAGCAAAACCTCAAGGGCGTTTTCGATCAGGAACCGCCTCCGGAGAAT ATGGAAATGTCGAATTACGACATTTACAGCGTGCCGAAGAATGTGAATGCTACGTTGAGCAACCGGATTTACAAACTGGAATTCAATTCAACGGTGGATG TTGTGTTACAGAATGCTAACACGATGACGCCTAACAACAGTGAGGCGCACCCTTGGCATCTCCACGGCCATGATTTTTGGGTGCTCGGGTACGGGGAAGG GAAGTATGATCCGACCCGGGATAGTGAGAGGTATAATCTTGTGGACCCGGTAATGAAGAATACGGTGCCGCTTCACCCTTATGGGTGGACCGCGATTCGG TTCAGGGCAGATAATCCGGGTGTGTGGTTCTTCCATTGCCACATTGAGTCTCACTTCTTCATGGGGATGGGTTTGGTTTTCGAAGAAGGGAGTTGGATGG TTGGCCGCCCGCCTTCTTCGGTTATGGGCTGTGGTAAAACCAAATCGGTTTACCCAACTAGAACTCCGTAG
AA sequence Show only first row Show all	>Lus10000871 pacid=23158799 polypeptide=Lus10000871 locus=Lus10000871.g ID=Lus10000871.BGIv1.0 annot-version=v1.0 MIEAKTHLHKWDVRYEYKSPDCYKKLSITINGMTPGPTIRAQQGDTIIVVVTNGLGTENVAIHWHGIRQFGTPWSDGAEGVTQCPVLPGESFTYRFVVDK AGTFMYHGHYGMQRSAGLNGMIVVSSRFRPVEPFSYDHDQSMLLTDWYHASTFEQVAGLSSVPFVFVGEPQSLLINGRGKYNCSQVPPAANGSTSVCDPT NPSCDPFTLTVIPGQTYRIRIGSLTSLSTLSFQIEGHKMTVVEADGNYVEPFETENLYVYSGETYSVLVKADQPPTRNYWITTSVVARKPSTPEGIAILN YYPNHPRRRPHTLPPAGPQWNDTGSRLEQSRAFKARIGYVHEPPSKPDRVIQLLNTQNKIGGKFKWALNNLSLALPTTPYLVALKQNLKGVFDQEPPPEN MEMSNYDIYSVPKNVNATLSNRIYKLEFNSTVDVVLQNANTMTPNNSEAHPWHLHGHDFWVLGYGEGKYDPTRDSERYNLVDPVMKNTVPLHPYGWTAIR FRADNPGVWFFHCHIESHFFMGMGLVFEEGSWMVGRPPSSVMGCGKTKSVYPTRTP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39830			Cupredoxin superfamily protein...		Lus10000871 [exp]	0	1
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10031033 [exp]	3.5	0.8337
AT4G28850		ATXTH26, XTH26,...	xyloglucan endotransglucosylas...		Lus10034957 [exp]	4.9	0.8337
AT1G70780			unknown protein		Lus10039287 [exp]	6.0	0.8337
					Lus10027606 [exp]	6.9	0.8184
AT2G14440			Leucine-rich repeat protein ki...		Lus10005049 [exp]	7.7	0.8070
AT4G37840		HKL3	hexokinase-like 3 (.1)		Lus10011584 [exp]	9.2	0.7692
AT3G08710		TRXH9, ATH9	THIOREDOXIN TYPE H 9, thioredo...		Lus10012859 [exp]	11.2	0.7510
AT5G24130			unknown protein		Lus10001061 [exp]	11.4	0.7322
AT1G30710			FAD-binding Berberine family p...		Lus10023369 [exp]	12.5	0.7068
AT5G24230			Lipase class 3-related protein...		Lus10022416 [exp]	13.0	0.7004

Compare expression of checked genes

Lus10000871 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.