Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04950 245 / 1e-79 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004127 [exp] 240 / 4e-71 AT3G14470 350 / 5e-105 NB-ARC domain-containing disease resistance protein (.1) Lus10004126 [exp] 240 / 6e-71 AT3G14470 353 / 6e-106 NB-ARC domain-containing disease resistance protein (.1) Lus10002609 [exp] 198 / 1e-55 AT3G14470 364 / 9e-110 NB-ARC domain-containing disease resistance protein (.1) Lus10022900 [exp] 198 / 1e-55 AT3G14470 350 / 2e-104 NB-ARC domain-containing disease resistance protein (.1) Lus10003571 [exp] 187 / 5e-52 AT3G14470 363 / 6e-110 NB-ARC domain-containing disease resistance protein (.1) Lus10022792 [exp] 167 / 6e-45 AT3G14470 343 / 7e-102 NB-ARC domain-containing disease resistance protein (.1) Lus10022395 [exp] 124 / 2e-34 AT3G04950 92 / 7e-24 unknown protein Lus10032781 [exp] 100 / 4e-25 AT3G14470 71 / 2e-15 NB-ARC domain-containing disease resistance protein (.1) Lus10029704 [exp] 99 / 2e-23 AT3G14470 92 / 7e-21 NB-ARC domain-containing disease resistance protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G034100 [exp] 253 / 1e-82 AT3G04950 290 / 3e-100 unknown protein Potri.012G121750 [exp] 90 / 3e-19 AT3G14470 338 / 8e-103 NB-ARC domain-containing disease resistance protein (.1) Potri.012G121801 [exp] 89 / 1e-18 AT3G14470 410 / 3e-127 NB-ARC domain-containing disease resistance protein (.1) Potri.015G121800 [exp] 87 / 3e-18 AT3G14470 377 / 3e-114 NB-ARC domain-containing disease resistance protein (.1) Potri.012G123200 [exp] 87 / 6e-18 AT3G14470 407 / 1e-125 NB-ARC domain-containing disease resistance protein (.1) Potri.012G121876 [exp] 85 / 2e-17 AT3G14470 404 / 6e-125 NB-ARC domain-containing disease resistance protein (.1) Potri.012G122200 [exp] 85 / 2e-17 AT3G14470 411 / 2e-127 NB-ARC domain-containing disease resistance protein (.1) Potri.012G123500 [exp] 85 / 2e-17 AT3G14470 395 / 4e-121 NB-ARC domain-containing disease resistance protein (.1) Potri.012G122900 [exp] 81 / 6e-16 AT3G14470 414 / 6e-129 NB-ARC domain-containing disease resistance protein (.1) Potri.012G121900 [exp] 78 / 3e-15 AT3G14470 399 / 2e-122 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10000934 pacid=23172929 polypeptide=Lus10000934 locus=Lus10000934.g ID=Lus10000934.BGIv1.0 annot-version=v1.0 ATGCATCCTCCCAGAGCTCTCCTGCGATACATTTCGATGATAAACCCAAAACCCATTTCCTCCTCCCAATGTCAACTAATTGCTGAGCTGAATCATCATC AGCAGCTCAGCCACCTCCGCCGCAGCATCTCCACCACTACGCCGTCGAGCTCGTGGATGGACTCGATCAAAGGCGTCTTCACCGGGAAGAAGAAGGAAGA TGAAGAAGGGAAACCGATGGAAACCGCCGCTTCATTCACTCTCACTCGTTTCGCCGATGAGCTGAAGAAGGCTCAGGAAATCGGATCTTTCAAGCAGTAC ATCGTCGGGAGGAGCAGTGAGGCGACTTTCTCCGACGCTTTCTCGAAGATGGAGGCCGTGATTCGGTACCTCAGCACTTTTGATGACGCCGGAGAGAAAC TTCAAACGAGCCAAAAGCAAGCAGCGGCGAAGCACTGCAAATGCACGATTGCTGATGTCGAGAGCGCGTTGGCGAAGTTCACGTGGGCTAAACAAGCACA GACTAAGCTTGATAAGATGAAGGAAGAAGGAAAGCCGATGCCTAAGAGCTTAGCTGAGGTGCAGAAACTTATGGGGAACACACCGATGGATCTTGCTAGG TCGAACCTGGCCAAGAGCGGGCAGATCAGTAGGAATGCTTTCTGTCCCTGCGTGAGGCAGCTTACTGAGAAAGATGCTGAATTATGGGTGACGAACCTCA AGAACGTGTGCTACCAGATCAGCGAGTGGAGAACCAGGATCCTCAAGCGCCGGCTTGCGAATGAGGAGGATGGCAAAGGCTGGTTGAAGCGGAAGCTGCT TAAACGAGTATGTCTTTCTGATTGTTGTTTATCTCCTCACGAAGTTGGTGTTCGCTATGATATTGCTTCTAGGATCAAAGAACTGTATGAAGATCTTGAG AGCATAGATAGAGATAAAAATATGTTCAGTTTTAGTCATAAGTCAGCTCCATCGTACAAAAGTTTGCAAACTGGTCCAAACATCAAATTCTCGGAGGTGA AAGGCAGAGTAAAAGAGACCGAATTAGTGAAGGGGAAGTTGCTACGAATTAGCGACGTTGTTCAAAGTATCTCTATCCAGGGTGCTGGAGGACTTGGGAA AACCACATTAGCGAAACTGCTCTACAATGACGAAGTTGTGGGAGGTCATTTCGACAAGAGAATTTGGGTTTGTGTATCCGACACTTTCGAGCCAACAACG GTGGCTAAAACCATACTTGAATCTCTTACTGGTTCTGCTCAACAAAGTCGCTAA
AA sequence Show only first row Show all	>Lus10000934 pacid=23172929 polypeptide=Lus10000934 locus=Lus10000934.g ID=Lus10000934.BGIv1.0 annot-version=v1.0 MHPPRALLRYISMINPKPISSSQCQLIAELNHHQQLSHLRRSISTTTPSSSWMDSIKGVFTGKKKEDEEGKPMETAASFTLTRFADELKKAQEIGSFKQY IVGRSSEATFSDAFSKMEAVIRYLSTFDDAGEKLQTSQKQAAAKHCKCTIADVESALAKFTWAKQAQTKLDKMKEEGKPMPKSLAEVQKLMGNTPMDLAR SNLAKSGQISRNAFCPCVRQLTEKDAELWVTNLKNVCYQISEWRTRILKRRLANEEDGKGWLKRKLLKRVCLSDCCLSPHEVGVRYDIASRIKELYEDLE SIDRDKNMFSFSHKSAPSYKSLQTGPNIKFSEVKGRVKETELVKGKLLRISDVVQSISIQGAGGLGKTTLAKLLYNDEVVGGHFDKRIWVCVSDTFEPTT VAKTILESLTGSAQQSR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04950			unknown protein		Lus10000934 [exp]	0	1
AT1G62330			O-fucosyltransferase family pr...		Lus10015558 [exp]	1.4	0.7778
AT4G19450			Major facilitator superfamily ...		Lus10034738 [exp]	1.7	0.7719
AT1G52340		SIS4, SDR1, ISI...	SHORT-CHAIN DEHYDROGENASE REDU...		Lus10016354 [exp]	2.0	0.8091
AT3G58140			phenylalanyl-tRNA synthetase c...		Lus10028547 [exp]	2.8	0.7696
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10038308 [exp]	4.2	0.7553
AT3G10520		ATGLB2, ARATHGL...	NON-SYMBIOTIC HAEMOGLOBIN 2, A...		Lus10037926 [exp]	5.0	0.7616
AT3G10620		ATNUDX26	nudix hydrolase homolog 26 (.1...		Lus10033839 [exp]	11.5	0.7219
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10013076 [exp]	13.0	0.7508
AT3G26115			Pyridoxal-5'-phosphate-depende...		Lus10036952 [exp]	14.7	0.6845
AT5G04420			Galactose oxidase/kelch repeat...		Lus10037933 [exp]	19.0	0.6748

Compare expression of checked genes

Lus10000934 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.