Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04770 498 / 7e-171 CAT6, ATCAT6 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1) AT3G10600 487 / 1e-166 CAT7 cationic amino acid transporter 7 (.1) AT4G21120 410 / 2e-136 CAT1, AAT1 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) AT1G17120 357 / 9e-116 CAT8 cationic amino acid transporter 8 (.1) AT2G34960 355 / 3e-115 CAT5 cationic amino acid transporter 5 (.1) AT3G03720 216 / 4e-62 CAT4 cationic amino acid transporter 4 (.1.2) AT1G58030 209 / 1e-59 CAT2 cationic amino acid transporter 2 (.1) AT5G36940 205 / 4e-58 CAT3 cationic amino acid transporter 3 (.1) AT1G05940 199 / 3e-56 CAT9 cationic amino acid transporter 9 (.1) AT1G31830 43 / 0.0005 Amino acid permease family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040142 [exp] 1078 / 0 AT5G04770 547 / 0.0 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1) Lus10023271 [exp] 418 / 2e-139 AT4G21120 902 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Lus10001581 [exp] 403 / 8e-131 AT4G21120 915 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Lus10005574 [exp] 369 / 3e-120 AT1G17120 811 / 0.0 cationic amino acid transporter 8 (.1) Lus10042817 [exp] 351 / 2e-113 AT4G21120 731 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Lus10020320 [exp] 215 / 8e-62 AT1G58030 912 / 0.0 cationic amino acid transporter 2 (.1) Lus10005671 [exp] 215 / 1e-61 AT1G58030 958 / 0.0 cationic amino acid transporter 2 (.1) Lus10020322 [exp] 214 / 4e-61 AT1G58030 949 / 0.0 cationic amino acid transporter 2 (.1) Lus10013638 [exp] 210 / 2e-59 AT1G58030 964 / 0.0 cationic amino acid transporter 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G083700 [exp] 806 / 0 AT5G04770 509 / 7e-176 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1) Potri.001G150700 [exp] 798 / 0 AT5G04770 519 / 2e-179 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1) Potri.010G241000 [exp] 505 / 9e-174 AT3G10600 781 / 0.0 cationic amino acid transporter 7 (.1) Potri.008G017100 [exp] 502 / 2e-172 AT3G10600 778 / 0.0 cationic amino acid transporter 7 (.1) Potri.015G133100 [exp] 398 / 1e-131 AT4G21120 845 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.012G131300 [exp] 397 / 2e-131 AT4G21120 848 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.013G030833 [exp] 390 / 9e-129 AT4G21120 833 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.013G030900 [exp] 390 / 9e-129 AT4G21120 833 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.003G154600 [exp] 377 / 1e-123 AT2G34960 870 / 0.0 cationic amino acid transporter 5 (.1) Potri.001G378500 [exp] 371 / 4e-121 AT1G17120 785 / 0.0 cationic amino acid transporter 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF00324 [flax] [poplar] AA_permease Amino acid permease
Representative CDS sequence Show only first row Show all	>Lus10000962 pacid=23148135 polypeptide=Lus10000962 locus=Lus10000962.g ID=Lus10000962.BGIv1.0 annot-version=v1.0 ATGGCCGATCAGCACGGCGGCGTGATGACCGCGATTTCCGCCGCGGCGGCGTCGCTCTGCGCCTACTTCAAAACCCTGCTGACGCAGACCCCTCACCGTC TCCGGAAGAGGGCGATGGCAACCTGGACGCCGGAGCAGGAGCTCACCCAGGTCCGCCTCCGCTCCGGCGCCGACATGAAGAGGAAGCTCCAGTGGTACGA CCTCATGGCGCTCGGGATCGGCGGAATGCTCGGCGTCGGAGTGTTCGTCACCACCGGCTTCGTCGCCAACGGCGTTTCCGGGCCGGCGGTTTTCATCTCC TACGTCATCGCCGGCATTTCCGCACTCCTGTCTTCGCTCTGCTACGCCGAATTCTCCGTCCAAATCCCCGTCGCCGGCGGCGCCTTCAGTTACCTCCGCG TCACTTTCGGGGAATTCATAGGATATTTTGCTGGTGCAAACATACTGATGGAGTATGTACTGTCAAATGCGGCAGTAGCAAGGAGCTTTACTGATTACCT ATGCCATGCAGTTGGAGTCAACGATTCTAATTCATGGAGGGTTGAAGTTGATGCCCTTCTTCCAGGCTACAACTACTTGGATTTCCCTGCTGTGGCTCTG ATTCTCCTTCTCACACTCTGCCTTTGCCACAGCACAAAGGAGAGCTCAATGCTGAACCTTGTTATGACAGTGTTCCACGTGATGTTCTTTGCCTTCATCA TTATTGCTGGCTTCTACAATGGGAGTGGCAAGAACTTGGTGAAGCCAAGTGGGCTGGCTCCTTTTGGTGTTAAGGGTGTTCTTGATGGTGCAGCCATTGT CTACTTCAGCTACATTGGGTATGACTCGGTTTCGACCATGGCCGAAGAGATTCAGAACCCTTCCAAGGCTCTGCCGCTTGGGATCGTTGGCTCTGTTCTG GTTGTGTGCACTCTGTATTGCTTGATGGCTTTGGCTCTTTGTGTAATGGTTCCTTACAATTTGATACCAAAAGAAGCATCATTCTCTGTAGCATTCCAAG AGATTGGGTGGGGATGGGCGAGCAACATCGTTGGAGCCGGTGCGAGTTTGGGGATAGTTGCTTCTCTTCTTGTTGCCATGCTTGGCCAAGCTAGATACCT CTGCGTGATCGGAAGGGCTCGACTAGTTCCATCGTGGCTCGCCAAGGTCAATCCCACCACCGGAACTCCCTTGAATGCTACCCTATTCTTAGGACTTTGC ACAGCATCAATCGCTCTGTTCACGGACCTAAGCATCGTGTTCGACATGATCTCGATCAGCACATTGCTTGTATTCTACCTAGTAGCCAACGCACTCATCT ACCGACGATACGTGATCATCAGCAAAAACCCTTCTTCCCAAACCCTCCTTTTCCTCTTCCTCCTCACCGCCACAGCAATGGGACTCTCGGTCGCATGGAA GGTCCAAGGACAATGGTGGGGGCTACCAGTGTTTGGAGGCGCAATGATCGCCATCACAGGGTTGTTCCAGATGATGGTGCCTTACGTTAGCCACGCGGAT GAAGGGTGGTTAGTGCCGTTGATGCCTTGGCCGGCTGCCATATCCATATTCCTCAATGTCTTCCTCATGACGACTCTAAAGATGCTGTCTTTCCAAAGGT TTGCCATATGGGGGTGTTTGATAACGGTGTTCTATGTTCTGTATGGTGTTCATTCAACCTACAACGCCGAGGAGGTCGCAGTTGATGGCCGTGTTGTCGA TCATGATGGAATCCTACAGCACAATGTGGATTCCTCATCGCCAATTCATCAACAGAATGCTGTTCATAAGCTAGAGATGCAGATGGTATGA
AA sequence Show only first row Show all	>Lus10000962 pacid=23148135 polypeptide=Lus10000962 locus=Lus10000962.g ID=Lus10000962.BGIv1.0 annot-version=v1.0 MADQHGGVMTAISAAAASLCAYFKTLLTQTPHRLRKRAMATWTPEQELTQVRLRSGADMKRKLQWYDLMALGIGGMLGVGVFVTTGFVANGVSGPAVFIS YVIAGISALLSSLCYAEFSVQIPVAGGAFSYLRVTFGEFIGYFAGANILMEYVLSNAAVARSFTDYLCHAVGVNDSNSWRVEVDALLPGYNYLDFPAVAL ILLLTLCLCHSTKESSMLNLVMTVFHVMFFAFIIIAGFYNGSGKNLVKPSGLAPFGVKGVLDGAAIVYFSYIGYDSVSTMAEEIQNPSKALPLGIVGSVL VVCTLYCLMALALCVMVPYNLIPKEASFSVAFQEIGWGWASNIVGAGASLGIVASLLVAMLGQARYLCVIGRARLVPSWLAKVNPTTGTPLNATLFLGLC TASIALFTDLSIVFDMISISTLLVFYLVANALIYRRYVIISKNPSSQTLLFLFLLTATAMGLSVAWKVQGQWWGLPVFGGAMIAITGLFQMMVPYVSHAD EGWLVPLMPWPAAISIFLNVFLMTTLKMLSFQRFAIWGCLITVFYVLYGVHSTYNAEEVAVDGRVVDHDGILQHNVDSSSPIHQQNAVHKLEMQMV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04770		CAT6, ATCAT6	ARABIDOPSIS THALIANA CATIONIC ...		Lus10000962 [exp]	0	1
AT5G15470		GAUT14	galacturonosyltransferase 14 (...		Lus10013189 [exp]	2.4	0.8207
AT3G01040		GAUT13	galacturonosyltransferase 13 (...		Lus10030703 [exp]	5.7	0.7952
AT1G79710			Major facilitator superfamily ...		Lus10041620 [exp]	6.0	0.7197
AT5G22930			Protein of unknown function (D...		Lus10016148 [exp]	6.5	0.7457
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10027657 [exp]	9.8	0.7514
AT4G09810			Nucleotide-sugar transporter f...		Lus10006810 [exp]	11.3	0.7437
AT5G67470		ATFH6	ARABIDOPSIS FORMIN HOMOLOG 6, ...		Lus10011524 [exp]	14.2	0.7905
AT1G31850			S-adenosyl-L-methionine-depend...		Lus10034729 [exp]	17.7	0.7385
AT2G42490			Copper amine oxidase family pr...		Lus10019485 [exp]	22.0	0.6834
AT5G67470		ATFH6	ARABIDOPSIS FORMIN HOMOLOG 6, ...		Lus10025195 [exp]	22.8	0.7457

Compare expression of checked genes

Lus10000962 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.