Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41710 391 / 2e-133 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2.3) AT3G54320 159 / 9e-44 AP2_ERF ATWRI1, ASML1, WRI1 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) AT1G16060 142 / 2e-38 AP2_ERF ADAP ARIA-interacting double AP2 domain protein (.1.2) AT1G79700 140 / 4e-38 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2) AT1G51190 142 / 8e-37 AP2_ERF PLT2 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) AT3G20840 139 / 1e-35 AP2_ERF PLT1 PLETHORA 1, Integrase-type DNA-binding superfamily protein (.1) AT5G57390 138 / 1e-35 AP2_ERF PLT5, EMK, CHO1, AIL5 PLETHORA 5, EMBRYOMAKER, CHOTTO 1, AINTEGUMENTA-like 5 (.1) AT5G10510 136 / 1e-34 AP2_ERF PLT3, AIL6 PLETHORA 3, AINTEGUMENTA-like 6 (.1.2.3) AT5G65510 135 / 1e-34 AP2_ERF PLT7, AIL7 PLETHORA 7, AINTEGUMENTA-like 7 (.1) AT5G17430 135 / 3e-34 AP2_ERF BBM BABY BOOM, Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040140 [exp] 744 / 0 AT2G41710 436 / 3e-151 Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10001553 [exp] 161 / 4e-45 AT1G16060 331 / 3e-112 ARIA-interacting double AP2 domain protein (.1.2) Lus10008939 [exp] 161 / 3e-44 AT3G54320 303 / 2e-98 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10028880 [exp] 160 / 1e-43 AT3G54320 298 / 1e-96 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10030671 [exp] 154 / 1e-41 AT3G54320 280 / 5e-90 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10013268 [exp] 145 / 4e-40 AT3G54320 275 / 3e-90 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10005253 [exp] 148 / 9e-40 AT3G54320 282 / 6e-91 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10036719 [exp] 148 / 1e-39 AT3G54320 288 / 3e-93 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10041618 [exp] 146 / 1e-39 AT1G79700 310 / 1e-104 Integrase-type DNA-binding superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G056400 [exp] 465 / 1e-162 AT2G41710 466 / 3e-163 Integrase-type DNA-binding superfamily protein (.1.2.3) Potri.006G049700 [exp] 460 / 2e-160 AT2G41710 462 / 1e-161 Integrase-type DNA-binding superfamily protein (.1.2.3) Potri.008G011900 [exp] 159 / 2e-44 AT3G54320 359 / 3e-122 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Potri.010G247200 [exp] 157 / 3e-43 AT3G54320 337 / 8e-113 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Potri.018G102200 [exp] 150 / 3e-41 AT1G16060 289 / 5e-96 ARIA-interacting double AP2 domain protein (.1.2) Potri.017G078600 [exp] 150 / 5e-41 AT3G54320 289 / 2e-94 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Potri.003G185300 [exp] 148 / 1e-40 AT1G16060 291 / 5e-97 ARIA-interacting double AP2 domain protein (.1.2) Potri.001G041500 [exp] 148 / 3e-40 AT1G16060 279 / 1e-91 ARIA-interacting double AP2 domain protein (.1.2) Potri.006G179900 [exp] 147 / 4e-40 AT1G16060 276 / 3e-91 ARIA-interacting double AP2 domain protein (.1.2) Potri.010G092800 [exp] 147 / 9e-40 AT3G54320 259 / 2e-82 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10000965 pacid=23148131 polypeptide=Lus10000965 locus=Lus10000965.g ID=Lus10000965.BGIv1.0 annot-version=v1.0 ATGGCTTCACCTTCGTCGGACCCGGGGCTGAAGCATGAAGTAGGAGTCGGAAGTAGCAGCGGAGGAGGGGAGAGTTCGGAGGCGGCCGTGGCTAATGATC AGCTTTTACTGTACAGAGGATTGAAGAAAGCCAAGAAGGACAGAGGCTGCACCGCTAAAGAACGAATCAGCAAGATGCCTCCCTGTACAGCTGGTAAACG CAGCTCCATTTACCGCGGAGTCACCAGGCATAGATGGACTGGTCGCTATGAAGCTCACCTTTGGGATAAAAGTACCTGGAATCAAAACCAAAATAAGAAA GGAAAACAAGGGGCATATGATGACGAAGAGGCTGCAGCTAGAGCATATGACCTTGCTGCCTTGAAATATTGGGGTCCTGGCACACTCATTAACTTTCCTG TTTCAGATTATACGAGAGATCTTGAAGAAATGCAGAATGTCTCCAGGGAGGAGTACTTGGCATCTCTTCGGAGAAAGAGCAGCGGGTATTCAAGAGGTAT CTCCAAATATCGTGGGCTATCCAGCTTACTTTTGTCATTTATCCTTTCTCCTTCGACATGTTTGTGGCCATCACAAAGTAGTCGGTGGGACTTGTCGATC GGTCGTATGGCAGGACCTGGATACTTCAGCAATGTGAATTACGGTGATGAACCTGAGAACCAATATATGGGCAGTTTTTGTATAGAGAGGAAGATCGATC TAACATCTCATATCAAATGGTGGGCTACTAATAAAAGCCGCCAAGTAGAATCGGTCTCCAGACCATCAGACGAGCCCAGACATAGCTCTGGAGAAGAAAT CAACCGAGAACTCAGAACCTTAGAGTGGGCAGTACAACCCACTGAGCCTTTCCAGATGCCTCGCCTGGGAGTTTCATCTTGTGAAGGAAAAAAGAAGCAC AAAGTCTCGGCCTTGAGCATACTCTCACAATCCATGGCATACAAGAGTTTACAAGAGAAAGCATCGACAAGGAAGGAAATCAATAACACTGAGAATGACG AGAACGAAAACAAGATGGCCGTTAACAAGACGTTGGTGGACTATGCCGGCAAATCTGTTGAGCAATCAACAAGTCATGATGATGATAACATTAACAGACT TGGAATAACAGGGATGAATGCATCGGCCGCATTGTCTATCCAGAGAAACATGTACCCACTGACTTCCTTCTTGACTGCTCCTCCACTTGTTAACAACTAC AACATTGGCTCTTTAGCTGACCCTCTCCGTTGGTCGACCCTTGTTCCTGCTCTTCCTCCTGGAATGTCGTCGAGTTCCGAGGTTACCAAGACTGAAGCAA GCTCAACCTATACGTTGTTCCAGCCAGAGGAGTGA
AA sequence Show only first row Show all	>Lus10000965 pacid=23148131 polypeptide=Lus10000965 locus=Lus10000965.g ID=Lus10000965.BGIv1.0 annot-version=v1.0 MASPSSDPGLKHEVGVGSSSGGGESSEAAVANDQLLLYRGLKKAKKDRGCTAKERISKMPPCTAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKK GKQGAYDDEEAAARAYDLAALKYWGPGTLINFPVSDYTRDLEEMQNVSREEYLASLRRKSSGYSRGISKYRGLSSLLLSFILSPSTCLWPSQSSRWDLSI GRMAGPGYFSNVNYGDEPENQYMGSFCIERKIDLTSHIKWWATNKSRQVESVSRPSDEPRHSSGEEINRELRTLEWAVQPTEPFQMPRLGVSSCEGKKKH KVSALSILSQSMAYKSLQEKASTRKEINNTENDENENKMAVNKTLVDYAGKSVEQSTSHDDDNINRLGITGMNASAALSIQRNMYPLTSFLTAPPLVNNY NIGSLADPLRWSTLVPALPPGMSSSSEVTKTEASSTYTLFQPEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41710	AP2_ERF		Integrase-type DNA-binding sup...		Lus10000965 [exp]	0	1
AT3G46940		DUT1	DUTP-PYROPHOSPHATASE-LIKE 1 (....		Lus10010809 [exp]	11.7	0.8857
AT3G14890			phosphoesterase (.1.2)		Lus10037922 [exp]	12.6	0.8162
AT1G02970		ATWEE1, WEE1	WEE1 kinase homolog (.1)		Lus10036576 [exp]	13.0	0.8743
AT3G48710			DEK domain-containing chromati...		Lus10022439 [exp]	26.3	0.8518
AT5G66750		CHR01, CHA1, SO...	SOMNIFEROUS 1, DECREASED DNA M...		Lus10024019 [exp]	26.9	0.8663
AT4G11080		3xHMG-box1	3xHigh Mobility Group-box1, HM...		Lus10003904 [exp]	32.6	0.8616
AT3G12170			Chaperone DnaJ-domain superfam...		Lus10010323 [exp]	35.1	0.8429
AT5G58280	B3		AP2/B3-like transcriptional fa...		Lus10017434 [exp]	38.0	0.8596
AT3G48710			DEK domain-containing chromati...		Lus10016746 [exp]	38.5	0.8251
AT4G40030			Histone superfamily protein (....		Lus10013946 [exp]	39.9	0.8430

Compare expression of checked genes

Lus10000965 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.