Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 218 / 6e-60 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27180 177 / 2e-46 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G27170 171 / 4e-44 transmembrane receptors;ATP binding (.1.2) AT4G36140 146 / 3e-36 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G17680 146 / 4e-36 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT3G51560 133 / 5e-32 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G63870 133 / 6e-32 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G45050 132 / 1e-31 WRKY ATWRKY16, TTR1 TOLERANT TO TOBACCO RINGSPOT NEPOVIRUS 1, Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT4G11170 126 / 1e-29 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT2G17050 125 / 1e-29 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008026 [exp] 934 / 0 AT5G36930 204 / 1e-54 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10035674 [exp] 783 / 0 AT5G36930 410 / 1e-121 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10037406 [exp] 732 / 0 AT5G36930 395 / 5e-116 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10042714 [exp] 720 / 0 AT5G36930 411 / 3e-124 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10020238 [exp] 707 / 0 AT1G69550 391 / 7e-117 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10017143 [exp] 674 / 0 AT1G27180 387 / 6e-116 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10004115 [exp] 652 / 0 AT5G27970 689 / 0.0 ARM repeat superfamily protein (.1.2) Lus10010574 [exp] 546 / 0 AT5G36930 397 / 4e-119 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10023272 [exp] 539 / 3e-177 AT5G36930 423 / 4e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T005501 [exp] 233 / 5e-65 AT5G36930 612 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G003285 [exp] 228 / 2e-63 AT5G36930 640 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G003942 [exp] 226 / 7e-63 AT5G36930 591 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G004599 [exp] 226 / 9e-63 AT5G36930 627 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.001G066500 [exp] 218 / 7e-61 AT5G36930 462 / 2e-146 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G002500 [exp] 216 / 2e-59 AT5G17680 587 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.005G206400 [exp] 215 / 3e-59 AT5G36930 587 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.012G053200 [exp] 214 / 2e-58 AT1G27170 1187 / 0.0 transmembrane receptors;ATP binding (.1.2) Potri.019G001602 [exp] 213 / 2e-58 AT5G36930 778 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002066 [exp] 204 / 3e-55 AT5G36930 631 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10001039 pacid=23171560 polypeptide=Lus10001039 locus=Lus10001039.g ID=Lus10001039.BGIv1.0 annot-version=v1.0 ATGCTGTCAAAGACTGATGGCACAATAGCTTTACAGAGTAAGTTCATCTCTAGCATTCTGAGGGATGATGTTCAGGTTAAAGATGCTAGTGAAGGGGTCA ACATAATTAGAGAGAGAGTTTGCAAATACAAGGTCTTAGTTGTTCTTGATGATGTAGATGACCGGTTTGACTTTGGACAGATTTTAGGAAAACTCGGACA TTTTTCCTCAGAAAGTAGATTCATCATCACCACAAGAAACACAAGAGTTCTAGAGCTCCTTCAAGAATATAAGCTCTATGAACCCAAAGAAATGAGCCAG GATCATTCCCTTCAGCTGTTCAGCATGCATGCTTTCCGTATGCATCGCCCTCCAAAAGATTATGCAACTCTATGTGGTGAATTCATAGAAGCTGCTGCAA AGCTACCTTTAGCTCTCAAGGTTCTTGGGTCACTCTTGTTTCTTAGGGATAGACAGTTTTGGGAAGAGAAGTTGTTGGAACTGAAAGAAGTGCCTGCTAC TACTAATAAGGTGCAGCAGAGATTGAAGATTAGTTACAATGAGCTGACCGATAACGAAAAACACATATTTCTTGACATAGCCTGTTTTTTCATTGGTGAA AATAAAGAACTGCCTTTTCATATGTGGAGAGACTGTAACTTTTATCCAGAAAGTGGGATTAGGACTCTTGTTCATAGATCCTTGGTAAAAATCGACGAGA GAAATCAGTTCTGGATGCATGATTTGCTTAGAGGCCTTGGCAGAGCCATTGTTATTGAGGAAGATGTTAAGCGCCCATGGAGGCGCAGCAGGATATGGTC CAATGAGGATGCTGTGAACATGTTGAAAAATGGAGAGGGGACTGGTCGCGTCGAAATGCTTATGGTTGACATGACACATGGAGATAATTGTGAATACACA CTCACAGACAAACAATTTGAGAAATTGCCAGCGCTGAAGTATCTAAATGTGATGCATGGAACACTGGAGGGAGACTTCAGTCGAATTCTTCCAGATATCC GTTGGATTACGCTGTATCACTGCTTTAAATTCCCTACCGATCTTAACTTAAACAAAGTCGTAATTCTCGATTTGGAGGATTCTAATGTAACAGATGACTG GGAAGGATGGAAGAGAGTTCAGGTGGCAAACAATCTGAAAGTTATAAATCTGTGTGGCTGCCATTTATTACGCAAAGTTCCCGACTTTTCCCGATGCGGA AGCATAGAGTTGATAGATCTCAGCTTATGTTTCTGGATGAAAGGGGTACTGGACATTGGCAGCTTCAGGAATCTGAAAGTGGTTAGGCTTCTAAGAAGTG GAATAACAGAGTTGACAGGTGAAATTGGAAAGCTTAAAAAACTCGAAGAGATGATAACGGGGAAGTTGGCCTGGCGAGCTGAAGAAGAAGAAGTACTACT CTTCCCTACAGCCTTAAAACGCCTAGCCATCTCGTCTCCTAAGGTTCCGAATCTCATGGAGCTTGAAGACCTAGTGGAGCTATGCTTTTTGGACTGTGAT ACCGCTCCCGAAATTCCTGCCTCCATTTGGCAACTCTCGAAGCTTACGATTCTGGAGTTGCATAACTGCAACTACAATTGTGGTGGTAATAGTAGTATTA GTCTACTGAAGGAGGATCAGGAAGGTTCCCTCCCATCATCTCTAACTCGCCTCATCATTAACCGGTTTCGCGGTTTGACTAGACTGCCAAATCTTGCAAA TCTGAATCACTTAGTGGAGCTACGTCTGTTTCACTTGGAACTGAGTGAAATCCTTGGCTTGGGTGAGCTGAAAGTGCTGAAAACACTCGAGATTTCCGAA TGCTCGAATTTAGACAATCCTGGAGGCCTCGAAAATCTCGTCCTTCTCGAGGAGTTGACTCTGACTCGTTGCGGTAGGCTTGAGAGCCTACCCAGTCTAT CGAACTTGATCAAGTTAGGCAAGCTGGTGATCGCTGAGTGTCCGTTCCTCTCCGAGGTTCAGGGTCTCGGTGAACTGGGGCGGTCTTTGGTACATCTGGA AGCTAGTGGCTGA
AA sequence Show only first row Show all	>Lus10001039 pacid=23171560 polypeptide=Lus10001039 locus=Lus10001039.g ID=Lus10001039.BGIv1.0 annot-version=v1.0 MLSKTDGTIALQSKFISSILRDDVQVKDASEGVNIIRERVCKYKVLVVLDDVDDRFDFGQILGKLGHFSSESRFIITTRNTRVLELLQEYKLYEPKEMSQ DHSLQLFSMHAFRMHRPPKDYATLCGEFIEAAAKLPLALKVLGSLLFLRDRQFWEEKLLELKEVPATTNKVQQRLKISYNELTDNEKHIFLDIACFFIGE NKELPFHMWRDCNFYPESGIRTLVHRSLVKIDERNQFWMHDLLRGLGRAIVIEEDVKRPWRRSRIWSNEDAVNMLKNGEGTGRVEMLMVDMTHGDNCEYT LTDKQFEKLPALKYLNVMHGTLEGDFSRILPDIRWITLYHCFKFPTDLNLNKVVILDLEDSNVTDDWEGWKRVQVANNLKVINLCGCHLLRKVPDFSRCG SIELIDLSLCFWMKGVLDIGSFRNLKVVRLLRSGITELTGEIGKLKKLEEMITGKLAWRAEEEEVLLFPTALKRLAISSPKVPNLMELEDLVELCFLDCD TAPEIPASIWQLSKLTILELHNCNYNCGGNSSISLLKEDQEGSLPSSLTRLIINRFRGLTRLPNLANLNHLVELRLFHLELSEILGLGELKVLKTLEISE CSNLDNPGGLENLVLLEELTLTRCGRLESLPSLSNLIKLGKLVIAECPFLSEVQGLGELGRSLVHLEASG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36930			Disease resistance protein (TI...		Lus10001039 [exp]	0	1
AT5G36930			Disease resistance protein (TI...		Lus10001040 [exp]	1.0	0.9423
AT5G36930			Disease resistance protein (TI...		Lus10008026 [exp]	2.0	0.8904
AT5G05970		NEDD1	NEURAL PRECURSOR CELL EXPRESSE...		Lus10001024 [exp]	4.0	0.8002
AT5G25900		ATKO1, CYP701A3...	CYTOCHROME P450 701 A3, ARABID...		Lus10042641 [exp]	9.5	0.7822
AT5G36930			Disease resistance protein (TI...		Lus10002249 [exp]	12.5	0.7257
AT1G80460		GLI1, NHO1	nonhost resistance to P. s. ph...		Lus10035914 [exp]	15.9	0.8379
AT2G19330		PIRL6	plant intracellular ras group-...		Lus10003229 [exp]	36.3	0.7761
AT5G47020			unknown protein		Lus10007259 [exp]	44.7	0.7297
AT5G36930			Disease resistance protein (TI...		Lus10008027 [exp]	49.5	0.7110
AT4G16480		ATINT4	inositol transporter 4 (.1)		Lus10010501 [exp]	78.7	0.6696

Compare expression of checked genes

Lus10001039 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.