Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22640 120 / 3e-34 MYB AtMYB3 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) AT4G38620 117 / 9e-33 MYB AtMYB4 myb domain protein 4 (.1) AT4G09460 114 / 5e-32 MYB ATMYB6, ATMYB8 myb domain protein 6 (.1) AT2G16720 114 / 1e-31 MYB AtY49, AtMYB7 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) AT1G71030 112 / 2e-31 MYB MYBL2, ATMYBL2 ARABIDOPSIS MYB-LIKE 2, MYB-like 2 (.1) AT4G34990 111 / 2e-30 MYB ATMYB32 myb domain protein 32 (.1) AT1G09540 110 / 2e-29 MYB AtMYB61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) AT4G17785 110 / 3e-29 MYB ATMYB39 myb domain protein 39 (.1) AT5G16770 109 / 3e-29 MYB ATMYB9 myb domain protein 9 (.1.2) AT5G26660 109 / 4e-29 MYB ATMYB4, ATMYB86 myb domain protein 86 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007008 [exp] 116 / 1e-34 AT5G14750 47 / 1e-07 WEREWOLF 1, WEREWOLF, myb domain protein 66 (.1) Lus10009448 [exp] 121 / 3e-34 AT4G09460 290 / 2e-99 myb domain protein 6 (.1) Lus10001548 [exp] 120 / 1e-33 AT4G09460 291 / 2e-99 myb domain protein 6 (.1) Lus10016948 [exp] 118 / 5e-33 AT4G09460 301 / 1e-103 myb domain protein 6 (.1) Lus10000411 [exp] 116 / 3e-32 AT4G09460 300 / 5e-103 myb domain protein 6 (.1) Lus10039173 [exp] 112 / 7e-31 AT3G13540 244 / 3e-81 myb domain protein 5 (.1) Lus10033473 [exp] 109 / 4e-30 AT2G16720 249 / 2e-83 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Lus10014129 [exp] 112 / 3e-29 AT4G38620 284 / 5e-90 myb domain protein 4 (.1) Lus10013762 [exp] 107 / 4e-29 AT3G13540 241 / 1e-79 myb domain protein 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G128900 [exp] 135 / 3e-40 AT4G09460 222 / 6e-73 myb domain protein 6 (.1) Potri.004G088100 [exp] 134 / 9e-40 AT4G09460 227 / 5e-75 myb domain protein 6 (.1) Potri.010G114000 [exp] 134 / 1e-39 AT4G38620 243 / 6e-81 myb domain protein 4 (.1) Potri.008G128500 [exp] 128 / 1e-37 AT4G38620 217 / 1e-70 myb domain protein 4 (.1) Potri.009G134000 [exp] 120 / 8e-34 AT4G38620 305 / 2e-104 myb domain protein 4 (.1) Potri.004G174400 [exp] 119 / 1e-33 AT4G38620 305 / 2e-104 myb domain protein 4 (.1) Potri.019G081500 [exp] 118 / 4e-33 AT1G22640 277 / 1e-93 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) Potri.013G109300 [exp] 118 / 6e-33 AT4G09460 262 / 9e-88 myb domain protein 6 (.1) Potri.005G112000 [exp] 115 / 3e-32 AT4G38620 277 / 5e-94 myb domain protein 4 (.1) Potri.004G138000 [exp] 115 / 1e-31 AT4G38620 257 / 8e-85 myb domain protein 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10001043 pacid=23178127 polypeptide=Lus10001043 locus=Lus10001043.g ID=Lus10001043.BGIv1.0 annot-version=v1.0 ATGAGCACTGAGGAGAACGACGACGTTTCCAAACAAGTCAGCAATAGCAAACAAGTTGAAGAAGCCACAAGCCACGGCGGCCAAGGCTGCTCCTGCTCCG ACGCTGCCGGTGGCTTGTACCGACGCTGTGGAAAGAGGTGTCGGCTCAGAGGGATGGAAGAATCTTCGAGACCAGACGTTGACGAGAATGACATGAAACG GCATCGTAAATTCGGCGAGGACGAAGAAGATCTCATTATCAAGCTCCATGCCCTCCTCGGTGACCGGTGGTCGTTAATAGCAGGGAGATTGCCCGGAAGA ACGGACAAAGAGATAGAAAACTACTGGAACTCTTACATGAAGAGGAAGCTGATGAGCATGGGGATTGACCCTAACAACCACCGCCCAAATCAGCCAGCTG TCGTCGTTGGCCCTTACGATCAACCGGTGACTGATTCCGAAGATGATGGGTTGTCCGATGCAACGAGTTTCTTGCAGGAATAA
AA sequence Show only first row Show all	>Lus10001043 pacid=23178127 polypeptide=Lus10001043 locus=Lus10001043.g ID=Lus10001043.BGIv1.0 annot-version=v1.0 MSTEENDDVSKQVSNSKQVEEATSHGGQGCSCSDAAGGLYRRCGKRCRLRGMEESSRPDVDENDMKRHRKFGEDEEDLIIKLHALLGDRWSLIAGRLPGR TDKEIENYWNSYMKRKLMSMGIDPNNHRPNQPAVVVGPYDQPVTDSEDDGLSDATSFLQE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22640	MYB	AtMYB3	ARABIDOPSIS THALIANA MYB DOMA...		Lus10001043 [exp]	0	1
AT2G04865			Aminotransferase-like, plant m...		Lus10035574 [exp]	1.0	0.8894
AT3G05880		RCI2A	RARE-COLD-INDUCIBLE 2A, Low te...		Lus10019890 [exp]	1.4	0.8592
AT2G38170		RCI4, ATCAX1, C...	RARE COLD INDUCIBLE 4, cation ...		Lus10004819 [exp]	5.4	0.7624
					Lus10018519 [exp]	5.7	0.7452
ATCG00680		ATCG00680.1, PS...	photosystem II reaction center...		Lus10006594 [exp]	7.7	0.8408
AT5G18430			GDSL-like Lipase/Acylhydrolase...		Lus10004774 [exp]	8.1	0.8387
					Lus10023972 [exp]	8.2	0.7448
AT5G60020		LAC17, ATLAC17	laccase 17 (.1)		Lus10034614 [exp]	8.7	0.8496
AT5G11420			Protein of unknown function, D...		Lus10013112 [exp]	10.5	0.8085
ATCG00680		ATCG00680.1, PS...	photosystem II reaction center...		Lus10006593 [exp]	11.7	0.8258

Compare expression of checked genes

Lus10001043 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.