Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53170 1026 / 0 FTSH11 FTSH protease 11 (.1) AT2G26140 548 / 0 FTSH4 FTSH protease 4 (.1) AT5G15250 403 / 6e-130 FTSH6, ATFTSH6 FTSH protease 6 (.1.2) AT2G30950 396 / 3e-127 FTSH2, VAR2 VARIEGATED 2, FtsH extracellular protease family (.1) AT1G06430 395 / 5e-127 FTSH8 FTSH protease 8 (.1) AT1G50250 389 / 3e-124 FTSH1 FTSH protease 1 (.1) AT5G42270 385 / 7e-123 FTSH5, VAR1 VARIEGATED 1, FtsH extracellular protease family (.1) AT1G07510 349 / 5e-108 FTSH10 FTSH protease 10 (.1) AT2G29080 346 / 7e-107 FTSH3 FTSH protease 3 (.1) AT3G47060 330 / 5e-101 FTSH7 FTSH protease 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039334 [exp] 1385 / 0 AT5G53170 1087 / 0.0 FTSH protease 11 (.1) Lus10014930 [exp] 1009 / 0 AT5G53170 1077 / 0.0 FTSH protease 11 (.1) Lus10038819 [exp] 1004 / 0 AT5G53170 1064 / 0.0 FTSH protease 11 (.1) Lus10012277 [exp] 392 / 3e-128 AT1G50250 935 / 0.0 FTSH protease 1 (.1) Lus10021824 [exp] 399 / 5e-128 AT5G42270 934 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10001054 [exp] 395 / 5e-127 AT2G30950 1154 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Lus10001420 [exp] 395 / 1e-125 AT2G30950 1155 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Lus10016003 [exp] 392 / 4e-125 AT5G42270 1129 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10001573 [exp] 355 / 6e-110 AT1G07510 1194 / 0.0 FTSH protease 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G020700 [exp] 1034 / 0 AT5G53170 1096 / 0.0 FTSH protease 11 (.1) Potri.012G000700 [exp] 1033 / 0 AT5G53170 1076 / 0.0 FTSH protease 11 (.1) Potri.006G227700 [exp] 540 / 0 AT2G26140 1066 / 0.0 FTSH protease 4 (.1) Potri.002G215100 [exp] 399 / 3e-128 AT2G30950 1040 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Potri.014G139500 [exp] 397 / 4e-127 AT2G30950 1057 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Potri.005G249200 [exp] 396 / 6e-127 AT5G42270 1077 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.002G012000 [exp] 394 / 5e-126 AT5G42270 1094 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.017G084000 [exp] 391 / 2e-125 AT5G15250 959 / 0.0 FTSH protease 6 (.1.2) Potri.016G099800 [exp] 350 / 4e-108 AT2G29080 1123 / 0.0 FTSH protease 3 (.1) Potri.009G033600 [exp] 348 / 2e-107 AT1G07510 1114 / 0.0 FTSH protease 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF01434 [flax] [poplar] Peptidase_M41 Peptidase family M41 CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10001060 pacid=23141282 polypeptide=Lus10001060 locus=Lus10001060.g ID=Lus10001060.BGIv1.0 annot-version=v1.0 ATGGCGATAGCTCTCCAAGCTTCACTCCTCTCCAGACCTTCCTTCTCTTTCAATTTCAAACACCCTCTTCGCCGCCACAACAATTTCTCCTCTCTTCGCT ACCCAATTCGCCGCCTTTCCTGCACATTGCATCCCGATACCCCCAATTTCGACTCCAGTCCCCTCTCTTCCTCCTCTTCCTCCTCTTTCAATTCTTTCCC TCCTTCCGATTCCCCTTTACCTGACAACAATGTCATTCATCTCGACCCTTCAACTCTCGGATTGGCCTCCGACCCCCACAACGCCGGCGATCCCGACTTC AAAAACGACGACAGCTTGCCTACCGCCGATAAATCACCTCCGTCGGCGGCGGAGCTGTACCCAACGGTGGCTTTCCTCATGTGGATTTGGTCTGCTTTGA AGAGAGGTATTGATAGCCTCTTGCGGTTCATTTCGTTCAACAGGTACCACCCATTTCGGCGAGACGTCAGTCTGTTAGATACACTGCTTGCTGAAGCTGA TGCTAACCCCAAAGACCCTCTGAAGCAAACCCAACTCTTGGTAGAGCTCAGTAAGCACAGCCCGGAGGAAGTGATAATGAGGTTTGAAGAAAGAGACCAT TCAGTGGACAGTAGAGGAGTGGCTGAGTATATCAAAGCACTTGTGAACACTAATGCTATTGATGATTTCCTTCCCGATGATAAATCTGGGAAGCCTTCAA GCCTTCCTGCTTTGCTGCAAGAACTTAAGCAGCGTGCAGCTGGAAACACGGATGAGCCTTTTGTTAACCCTGGCGTGTCTGAGAAGCAACCGTTGCATGT GATGATGGTTGATCCGAGAGTTTCGCCACACAAGTCTCGGTCCAACAAGTCACCGTTCACGACGGAGTTTATCTACACTATTCTTCTCACTGTTGGAACT ATACTAATATGGTTGATGGGTGCTGCTGCCCTTCAGAGATATATAGGGAATCTGGGAGGAATAGGAGGTTCAGGAGTTGGATCGAGTTCATCCTATTCTC CAAAGGAACTTAACAAAGAAGTCATGCCAGAGAAAAATGTTAAAACATTCAAGGATGTGAAAGGGTGCGACGATGCTAAACAAGAGCTCGAGGAAGTGGT CGAATACCTTAGGAACCCTACCAAATTTACTAGGCTTGGCGGAAAGTTGCCCAAGGGAATTCTTTTGACTGGAGCACCAGGAACTGGAAAAACTTTGCTC GCAAAGGCTATTGCTGGAGAAGCTGGAGTACCGTTCTTCTATAGAGCAGGATCAGAGTTTGAGGAAATGTTTGTTGGTGTTGGTGCGAGGCGTGTAAGAT CCTTATTCCAAGCAGCTAAGAAGAAGGCTCCTTGTATTATATTTATCGACGAAATCGATGCTGTTGGTTCGACACGTAAACAATGGGAAGGCCACACGAA GAAGACTTTACATCAATTACTTGTCGAAATGGACGGTTTCGAGCAGAATGAGGGAATAATTCTAATGGCTGCAACAAACTTGCCTGATATCCTTGATCCT GCTTTGACCAGGCCTGGTAGATTCGATAGACATATAGTAGTTCCAAGTCCTGACGTACGTGGACGGCAGGAGATATTGGACCTCTACTTGAAAGATAAAC CGATTTCGGAAGACGTGGATATTAAAGCAATTGCACGGGGTACCCCGGGCTTTAATGGAGCAGATCTTGCGAACTTGGTAAACATTGCTGCCATTAAAGC TGCAGTTGAAGGAGCTGAGAAGTTAAATTCCGCTCAGTTAGAGTTTGCGAAAGACAGGATAGTTATGGGAACCGAGCGAAAGACAATGTTCGTATCAGAA GAGTCAAAGAAGTTGACTGCATATCACGAGAGTGGACATGCCATCATAGCGTTTCATACCAAGGCTGCACACCCGATTCACAAGGCAACCATAATGCCTC GCGGATCTGCTCTAGGAATGGTCACCCAACTTCCTTCAGATGACGAGACTTCAATCAGCAAGAAGCAGTTGCTGGCTCGGCTAGACGTTTGCATGGGTGG AAGAGTGGCTGAAGAGCTCATCTTCGGTCGAGACCATGTCACCACTGGAGCAAGTAGTGATCTCAACTCTGCTACAGAGCTCGCATATTATATGGTATCT AGCTGTGGAATGAGCGATGAAATCGGACCGGTCCACATCAAGGAACGACCCAGCTCAGAAATGCAATCACAGATCGATGCTGAAGTTGTGAAGCTCCTGA GAGAAGCATACGAGCGAGTGAAGGCCCTGTTAAAGAAGCATGAGAAGGCATTACACGCCCTGGCAAATGCTCTTCTGGAGTACGAAACACTTACTGCAGA AGAGATAAAGCGGGTTCTGTTGCCTGTTCGCGAAGGGAAGCTCCCGGAACAGCAACAAGAACAACAACAAGACCAAGAACAAGGTGATCTTGTGATGGCT TGA
AA sequence Show only first row Show all	>Lus10001060 pacid=23141282 polypeptide=Lus10001060 locus=Lus10001060.g ID=Lus10001060.BGIv1.0 annot-version=v1.0 MAIALQASLLSRPSFSFNFKHPLRRHNNFSSLRYPIRRLSCTLHPDTPNFDSSPLSSSSSSSFNSFPPSDSPLPDNNVIHLDPSTLGLASDPHNAGDPDF KNDDSLPTADKSPPSAAELYPTVAFLMWIWSALKRGIDSLLRFISFNRYHPFRRDVSLLDTLLAEADANPKDPLKQTQLLVELSKHSPEEVIMRFEERDH SVDSRGVAEYIKALVNTNAIDDFLPDDKSGKPSSLPALLQELKQRAAGNTDEPFVNPGVSEKQPLHVMMVDPRVSPHKSRSNKSPFTTEFIYTILLTVGT ILIWLMGAAALQRYIGNLGGIGGSGVGSSSSYSPKELNKEVMPEKNVKTFKDVKGCDDAKQELEEVVEYLRNPTKFTRLGGKLPKGILLTGAPGTGKTLL AKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDP ALTRPGRFDRHIVVPSPDVRGRQEILDLYLKDKPISEDVDIKAIARGTPGFNGADLANLVNIAAIKAAVEGAEKLNSAQLEFAKDRIVMGTERKTMFVSE ESKKLTAYHESGHAIIAFHTKAAHPIHKATIMPRGSALGMVTQLPSDDETSISKKQLLARLDVCMGGRVAEELIFGRDHVTTGASSDLNSATELAYYMVS SCGMSDEIGPVHIKERPSSEMQSQIDAEVVKLLREAYERVKALLKKHEKALHALANALLEYETLTAEEIKRVLLPVREGKLPEQQQEQQQDQEQGDLVMA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53170		FTSH11	FTSH protease 11 (.1)		Lus10001060 [exp]	0	1
AT5G15700			DNA/RNA polymerases superfamil...		Lus10031952 [exp]	1.4	0.9646
AT1G12800			Nucleic acid-binding, OB-fold-...		Lus10008475 [exp]	1.4	0.9538
AT3G01370		ATCFM2	Arabidopsis thaliana CRM famil...		Lus10039467 [exp]	3.5	0.9503
AT1G76050			Pseudouridine synthase family ...		Lus10017250 [exp]	4.5	0.9264
AT3G51820		PDE325, ATG4, G...	PIGMENT DEFECTIVE 325, UbiA pr...		Lus10000126 [exp]	5.3	0.9232
AT5G48040			Ubiquitin carboxyl-terminal hy...		Lus10012201 [exp]	5.8	0.9062
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10015112 [exp]	6.0	0.9391
AT3G57430		OTP84	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10038400 [exp]	7.3	0.9272
AT3G27180			S-adenosyl-L-methionine-depend...		Lus10041566 [exp]	7.5	0.9274
AT5G15700			DNA/RNA polymerases superfamil...		Lus10035150 [exp]	8.2	0.9435

Compare expression of checked genes

Lus10001060 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.