Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02940 219 / 3e-69 MYB ATMYB107 myb domain protein 107 (.1) AT5G16770 219 / 3e-69 MYB ATMYB9 myb domain protein 9 (.1.2) AT4G17785 218 / 4e-68 MYB ATMYB39 myb domain protein 39 (.1) AT5G10280 216 / 7e-68 MYB ATMYB92, AtMYB64 myb domain protein 92 (.1) AT1G34670 214 / 6e-67 MYB ATMYB93 myb domain protein 93 (.1) AT5G65230 209 / 1e-65 MYB ATMYB53 myb domain protein 53 (.1) AT4G21440 209 / 4e-65 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT4G12350 203 / 3e-63 MYB ATMYB42 myb domain protein 42 (.1) AT4G22680 202 / 4e-63 MYB ATMYB85 myb domain protein 85 (.1) AT4G05100 203 / 7e-63 MYB ATMYB74 myb domain protein 74 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040139 [exp] 328 / 2e-113 AT5G16770 231 / 9e-76 myb domain protein 9 (.1.2) Lus10011031 [exp] 235 / 9e-75 AT5G16770 223 / 3e-70 myb domain protein 9 (.1.2) Lus10003001 [exp] 238 / 3e-72 AT3G07840 362 / 1e-118 Pectin lyase-like superfamily protein (.1) Lus10041142 [exp] 220 / 1e-69 AT1G34670 315 / 2e-106 myb domain protein 93 (.1) Lus10036472 [exp] 218 / 1e-68 AT5G10280 307 / 1e-103 myb domain protein 92 (.1) Lus10018418 [exp] 210 / 2e-65 AT4G21440 334 / 5e-114 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10002593 [exp] 208 / 7e-65 AT4G21440 330 / 2e-112 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10039743 [exp] 201 / 4e-63 AT4G21440 296 / 2e-100 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10038913 [exp] 198 / 4e-62 AT1G66230 247 / 3e-82 myb domain protein 20 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G139900 [exp] 228 / 1e-72 AT5G16770 254 / 7e-83 myb domain protein 9 (.1.2) Potri.003G094200 [exp] 227 / 6e-72 AT5G16770 251 / 1e-81 myb domain protein 9 (.1.2) Potri.007G093900 [exp] 223 / 1e-70 AT1G34670 289 / 6e-96 myb domain protein 93 (.1) Potri.005G164900 [exp] 221 / 1e-69 AT1G34670 309 / 7e-104 myb domain protein 93 (.1) Potri.005G074500 [exp] 221 / 1e-69 AT1G34670 290 / 1e-96 myb domain protein 93 (.1) Potri.002G096800 [exp] 212 / 2e-66 AT1G34670 305 / 2e-102 myb domain protein 93 (.1) Potri.019G050900 [exp] 209 / 5e-65 AT5G16770 279 / 2e-92 myb domain protein 9 (.1.2) Potri.011G125900 [exp] 209 / 7e-65 AT4G21440 281 / 1e-92 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.004G033100 [exp] 209 / 1e-64 AT4G21440 293 / 4e-97 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.019G118200 [exp] 206 / 2e-63 AT4G05100 278 / 7e-92 myb domain protein 74 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10001093 pacid=23148928 polypeptide=Lus10001093 locus=Lus10001093.g ID=Lus10001093.BGIv1.0 annot-version=v1.0 ATGGCGAGGCCACCGTGCTGCGGCGAAGATCAGGACGACAACAAGGTGAAGAAAGGGCCATGGACGGCTGAGGAAGACGAGAAGCTCGTCCACTTCATTA CCAACAACGGCCACACCAACTGGAAGTCCCTACCTAAGCTGGCCGGTCTCAACCGCTGCGGCAAGAGCTGCCGTTTGCGCTGGACCAATTACCTCCGCCC CGATATCAAGCGCGGCAAGTTCTCCGATGACGAGGAGCGCCTCATCATCAACCTCCACTCCGTCCTCGGCAACAAATGGTCGAGAATAGCAACGCACATG CCAGGAAGGACAGATAACGAGATAAAGAACTACTACAACACGCACATAAGGAAGAAGCTGTTGCAAATGGGGATAGACCCACAGACGCACAAGCCGAGGA CAGATCACCTCCAGCTGAATCAGTTCCTTAATCTTTCCCAGTTGATCGGGGCCGCTCATCAGCTCACAACTATTTTTAATAATAATAATAATATGGTGCC GCAACAAAACCTTTTTACCCAGCATGCAGCCGCTCCTCCGGCTGCGGCTCAGGCTCAGGTTCAGGTGATGCAGAATCTACTGAACCTTCTCAACCCAACA TCGTTACCGCTGTCGTCGATGTCAACGCAAGATGAGATGCTGTTGTCGAGAATCCTGAACCCTAGCAGTTCGTCATCTCATCATCAGGAGTTGTTTTGCA ATCAGTTTCTAAACCCAGTACAGCAGCCTGCGTTCTGCGCCGCCAGGGAAGGTGGGTTGCCGGGGCTTGTTTCGGCGGAGAGTGGCTCACCGGAAGGATC CTCGTCGTCCCTCAAAGGAGAAATGATGGCAGGAATTACTAAGATGGAGGGCGGGAATAATAATAATAATATTTACCAAACCAACTACTCCTCTTCCGAT GGGGGTTTCAGCTCGTCGCCGGCGGAGGATGGACATGAGTATGAAGAATGGGAGAAACTGCTGATGATGGATGACTTCACCTCCACCGGTGGCGGTTTCT TCTCTTCATGGAAAGATGACGACCTGTTGGAGTAG
AA sequence Show only first row Show all	>Lus10001093 pacid=23148928 polypeptide=Lus10001093 locus=Lus10001093.g ID=Lus10001093.BGIv1.0 annot-version=v1.0 MARPPCCGEDQDDNKVKKGPWTAEEDEKLVHFITNNGHTNWKSLPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSDDEERLIINLHSVLGNKWSRIATHM PGRTDNEIKNYYNTHIRKKLLQMGIDPQTHKPRTDHLQLNQFLNLSQLIGAAHQLTTIFNNNNNMVPQQNLFTQHAAAPPAAAQAQVQVMQNLLNLLNPT SLPLSSMSTQDEMLLSRILNPSSSSSHHQELFCNQFLNPVQQPAFCAAREGGLPGLVSAESGSPEGSSSSLKGEMMAGITKMEGGNNNNNIYQTNYSSSD GGFSSSPAEDGHEYEEWEKLLMMDDFTSTGGGFFSSWKDDDLLE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16770	MYB	ATMYB9	myb domain protein 9 (.1.2)		Lus10001093 [exp]	0	1
AT5G16770	MYB	ATMYB9	myb domain protein 9 (.1.2)		Lus10040139 [exp]	2.8	0.9250
AT5G09530		PRP10, PELPK1	proline-rich protein 10, Pro-G...		Lus10017818 [exp]	3.9	0.9394
AT4G38080			hydroxyproline-rich glycoprote...		Lus10033360 [exp]	6.0	0.9375
AT5G09530		PRP10, PELPK1	proline-rich protein 10, Pro-G...		Lus10018841 [exp]	7.7	0.9250
AT1G74460			GDSL-like Lipase/Acylhydrolase...		Lus10001643 [exp]	7.7	0.8831
					Lus10033359 [exp]	8.1	0.9291
AT3G26830		CYP71B15, PAD3	PHYTOALEXIN DEFICIENT 3, Cytoc...		Lus10011384 [exp]	8.1	0.8535
AT5G26820		RTS3, MAR1, ATI...	MULTIPLE ANTIBIOTIC RESISTANCE...		Lus10010912 [exp]	9.0	0.8635
AT5G23190		CYP86B1	"cytochrome P450, family 86, s...		Lus10010193 [exp]	11.3	0.9062
					Lus10003550 [exp]	11.5	0.9243

Compare expression of checked genes

Lus10001093 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.