Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58870 1030 / 0 FTSH9 FTSH protease 9 (.1) AT3G47060 1019 / 0 FTSH7 FTSH protease 7 (.1) AT1G50250 378 / 1e-119 FTSH1 FTSH protease 1 (.1) AT2G30950 365 / 4e-115 FTSH2, VAR2 VARIEGATED 2, FtsH extracellular protease family (.1) AT5G42270 364 / 1e-114 FTSH5, VAR1 VARIEGATED 1, FtsH extracellular protease family (.1) AT1G06430 363 / 1e-114 FTSH8 FTSH protease 8 (.1) AT5G15250 349 / 4e-109 FTSH6, ATFTSH6 FTSH protease 6 (.1.2) AT1G07510 339 / 4e-104 FTSH10 FTSH protease 10 (.1) AT2G29080 336 / 1e-102 FTSH3 FTSH protease 3 (.1) AT2G26140 308 / 2e-93 FTSH4 FTSH protease 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005868 [exp] 1508 / 0 AT5G58870 1105 / 0.0 FTSH protease 9 (.1) Lus10018210 [exp] 1198 / 0 AT5G58870 1049 / 0.0 FTSH protease 9 (.1) Lus10040695 [exp] 1155 / 0 AT5G58870 1047 / 0.0 FTSH protease 9 (.1) Lus10012277 [exp] 375 / 1e-121 AT1G50250 935 / 0.0 FTSH protease 1 (.1) Lus10016003 [exp] 376 / 7e-119 AT5G42270 1129 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10021824 [exp] 376 / 8e-119 AT5G42270 934 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10001054 [exp] 366 / 2e-115 AT2G30950 1154 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Lus10001420 [exp] 366 / 3e-114 AT2G30950 1155 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Lus10001573 [exp] 337 / 3e-103 AT1G07510 1194 / 0.0 FTSH protease 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G043100 [exp] 1147 / 0 AT5G58870 1039 / 0.0 FTSH protease 9 (.1) Potri.001G249100 [exp] 1111 / 0 AT5G58870 997 / 0.0 FTSH protease 9 (.1) Potri.005G249200 [exp] 379 / 3e-120 AT5G42270 1077 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.002G012000 [exp] 376 / 4e-119 AT5G42270 1094 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.014G139500 [exp] 367 / 2e-115 AT2G30950 1057 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Potri.002G215100 [exp] 366 / 3e-115 AT2G30950 1040 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Potri.017G084000 [exp] 350 / 2e-109 AT5G15250 959 / 0.0 FTSH protease 6 (.1.2) Potri.009G033600 [exp] 348 / 3e-107 AT1G07510 1114 / 0.0 FTSH protease 10 (.1) Potri.016G099800 [exp] 338 / 1e-103 AT2G29080 1123 / 0.0 FTSH protease 3 (.1) Potri.006G227700 [exp] 315 / 7e-96 AT2G26140 1066 / 0.0 FTSH protease 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF01434 [flax] [poplar] Peptidase_M41 Peptidase family M41 CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10001203 pacid=23173057 polypeptide=Lus10001203 locus=Lus10001203.g ID=Lus10001203.BGIv1.0 annot-version=v1.0 ATGTCGTCGATGATTGAAACTCTAAGGCCGGTTTCCCGGTTTCACTTAGACTCCAATTCTACTAGATGTCGTTATCCACCTCCTCACTGCCGCGGGTCTT CCCCGTTTCGCGCTCATTCTACGGTTCCGCACCACCAGGATCCTCTACGGTTTCCTCGCCCGGCCAACCTTTCTAATGATTCGTCACCGTTTGTTGCTCT ACAGGATTCTAATCTATGGGGAAGTGGTGGGGTTTGGTGGAGCAGTAGATTGAGAGAGGATAAATTATCGGCTAATTGTCAGGACGGGGATTCCACGGCC AGCTCCAGCGATGAAACCGATGGGCAACAGGTTAGCAGCAGCAGTACAAATACGCCGACTGCGGGTCCTGAGCAGAGGAAGGAGAAGCAAGGGAAAAGTG ACTGGTGGTGGTGGTCGAAACAGCAGAATTGGAAATGGCAGCCGCTAATTCAAGCTCAGGAGGTTGGGGTGTTGCTTTTGCAATTGGGAATTGTTATGTT CGTCATGCGGCTGCTGCGGCCTGGGATTCCGTTACCGGGGTCGGAGCCTAGACCGCCGACAACTTTCGTTAGTGTACCGTACAGCGACTTCTTGAGCAAG ATTAATAGCAACATGGTGCAGAAGGTTGAGGTTGATGGCGTGCACATAATGTTTAAGCTGAAGAATGAAAGGACCGGAAATCAGGAGAGCGCGGATGTGG TCGACGGTAGGTGGCAGGAGTCCGAGGGCTTGTTAAGGAGCATTGCGCCCACCACTAGGAAGATTTTGTACACAACTACTAGACCCACCGATATCAAGAC TCCCTACGAGAAGATGCTTGAGAATCAAGTGGTTTTTGGATCGCCTGATAGGAGGTCTGGTGGTTTTTTCAACTCAGCTTTGATAGCTATGTTCTATGTG GCCGTGCTTGCTGGACTTCTCCATAAGTTCCCTGTTAGTTTTTCTCAGCATACACCTGGTCAGATGAGAAATCGCAAGTCTGGTGGTTCTGGAGGTACAA AAGTTTCTGAGCAAGGGGATACAATTACTTTTGCTGATGTTGCTGGCGTCGATGAAGCTAAGGAAGAATTAGAAGAAATCGTGGAGTTTCTCAAGAATCC AGACAGGTACATAAAACTTGGGGCGCGTCCTCCACGGGGTGTTCTGCTGGTTGGTCTTCCTGGTACAGGCAAGACTCTTCTAGCTAAGGCTGTTGCCGGA GAAGCTGAAGTCCCTTTCATTAGTTGTTCTGCTAGTGAGTTTGTAGAGTTGTACGTTGGAATGGGTGCCTCCCGTGTAAGAGATCTGTTTGCACGAGCAA AGAAGGAGGCACCTTCAATAATATTCATTGATGAGATAGATGCTGTGGCAAAAAGTCGTGATGGGAAATTCCGCATAGTCAGCAATGATGAGCGTGAGCA AACTTTGAACCAGTTGCTTACTGAGATGGATGGATTTGATAGCAACTCTGCTGTGATTGTGCTTGGAGCAACGAATCGCTCAGATGTATTGGATCCTGCA CTTCGCAGACCTGGAAGATTTGACCGAGTAGTAACGGTGGAAGCACCTGATAGGAATGGGAGAGAGGCCATTTTGAAAGTGCATGCTTGCAAGAAGGAGC TACCTTTAGGCAAAGATGTCGACCTTAGTGGCATTGCTTCTATGACCACTGGATTCACTGGGGCTGATCTTGCAAATATAGTAAATGAAGCTGCTCTATT GGCTGGAAGGAAAAGTAAAACAGTCGTAGAGAGAATAGACTTCATTCAGGCCGTGGAGAGGTCTATAGCTGGCATAGAGAAAAAGACAGCCAAGTTGCAA GGGAGTGAGAGGGCTGTTGTTGCACGTCATGAAGCTGGGCATGCAGTAGTAGGCACTGCTGTTGCTAGTCTCATTCCGGGACAGCCACGTGTAGAGAAAT TGAGCATTCTACCACGGACGGGTGGTGCTTTGGGCTTTACTTATACCCCTCCAACAAATGAGGACAGGCATTTGCTTTTCATCGATGAGTTACGTGGCCG CTTGGTCACCCTTCTGGGAGGACGTGCAGCAGAAGAACTAGTATACGCAGGCCGTGTATCTACCGGCGCACTAGATGATATTCGACGAGCTACAGACATG GCATACAAGGCCATAGCTGAATATGGCCTCAATCGAACTATCGGTCCTGTATCTGTTGGAACACTTACTGGAGGGGGAATGGATGAATCTGGAGCTGGTC CCTGGGGAAGGGAGCAGGGTCATCTTGTTGATCTCGTTCAAAAGGAGGTAAAGCAATTGCTACAATCTGCACTAGACGTGGCACTCTGCGTTCTGCGTGC TAATCCTACTCTCTTGGAAGGGCTTGGTGCTCATCTGGAAGAGAGTGAGAAAGTAGAGGGGGAAGAGCTACAAGAGTGGCTGAAATTGGTAGTTGCTCCA GAAGAGCTAACTTCATTCCTAAAAGGTAAGCAAGAAACTTCTGGGAAATTAGGGGTAGCAAGTTAG
AA sequence Show only first row Show all	>Lus10001203 pacid=23173057 polypeptide=Lus10001203 locus=Lus10001203.g ID=Lus10001203.BGIv1.0 annot-version=v1.0 MSSMIETLRPVSRFHLDSNSTRCRYPPPHCRGSSPFRAHSTVPHHQDPLRFPRPANLSNDSSPFVALQDSNLWGSGGVWWSSRLREDKLSANCQDGDSTA SSSDETDGQQVSSSSTNTPTAGPEQRKEKQGKSDWWWWSKQQNWKWQPLIQAQEVGVLLLQLGIVMFVMRLLRPGIPLPGSEPRPPTTFVSVPYSDFLSK INSNMVQKVEVDGVHIMFKLKNERTGNQESADVVDGRWQESEGLLRSIAPTTRKILYTTTRPTDIKTPYEKMLENQVVFGSPDRRSGGFFNSALIAMFYV AVLAGLLHKFPVSFSQHTPGQMRNRKSGGSGGTKVSEQGDTITFADVAGVDEAKEELEEIVEFLKNPDRYIKLGARPPRGVLLVGLPGTGKTLLAKAVAG EAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGKFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPA LRRPGRFDRVVTVEAPDRNGREAILKVHACKKELPLGKDVDLSGIASMTTGFTGADLANIVNEAALLAGRKSKTVVERIDFIQAVERSIAGIEKKTAKLQ GSERAVVARHEAGHAVVGTAVASLIPGQPRVEKLSILPRTGGALGFTYTPPTNEDRHLLFIDELRGRLVTLLGGRAAEELVYAGRVSTGALDDIRRATDM AYKAIAEYGLNRTIGPVSVGTLTGGGMDESGAGPWGREQGHLVDLVQKEVKQLLQSALDVALCVLRANPTLLEGLGAHLEESEKVEGEELQEWLKLVVAP EELTSFLKGKQETSGKLGVAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58870		FTSH9	FTSH protease 9 (.1)		Lus10001203 [exp]	0	1
AT1G20920			P-loop containing nucleoside t...		Lus10035328 [exp]	4.1	0.8536
AT1G20920			P-loop containing nucleoside t...		Lus10029986 [exp]	5.7	0.8357
AT5G07920		ATDGK1, DGK1	DIACYLGLYCEROL KINASE 1, diacy...		Lus10003460 [exp]	11.2	0.8211
AT4G30360		ATCNGC17	cyclic nucleotide-gated channe...		Lus10015510 [exp]	13.5	0.8065
AT3G58670			Protein of unknown function (D...		Lus10017645 [exp]	20.6	0.8032
AT2G18280	TUB	AtTLP2	tubby like protein 2 (.1.2)		Lus10014299 [exp]	30.3	0.7811
AT4G13270			Late embryogenesis abundant (L...		Lus10043216 [exp]	32.1	0.7891
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10001304 [exp]	32.9	0.8064
AT1G22310		ATMBD8, MBD8	methyl-CPG-binding domain 8 (....		Lus10035631 [exp]	42.9	0.8021
AT4G16480		ATINT4	inositol transporter 4 (.1)		Lus10017561 [exp]	44.2	0.7681

Compare expression of checked genes

Lus10001203 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.