Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07290 437 / 6e-153 GONST2 golgi nucleotide sugar transporter 2 (.1) AT2G13650 350 / 2e-119 GONST1 golgi nucleotide sugar transporter 1 (.1.2.3) AT5G19980 64 / 5e-11 GONST4 golgi nucleotide sugar transporter 4 (.1) AT4G31600 62 / 2e-10 UDP-N-acetylglucosamine (UAA) transporter family (.1), UDP-N-acetylglucosamine (UAA) transporter family (.2) AT4G32272 54 / 9e-08 Nucleotide/sugar transporter family protein (.1.2) AT1G77610 50 / 1e-06 EamA-like transporter family protein (.1) AT1G76340 49 / 3e-06 GONST3 golgi nucleotide sugar transporter 3 (.1) AT1G21870 49 / 3e-06 GONST5 golgi nucleotide sugar transporter 5 (.1) AT2G28315 42 / 0.0004 Nucleotide/sugar transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005865 [exp] 639 / 0 AT1G07290 521 / 0.0 golgi nucleotide sugar transporter 2 (.1) Lus10024126 [exp] 367 / 5e-125 AT2G13650 535 / 0.0 golgi nucleotide sugar transporter 1 (.1.2.3) Lus10005387 [exp] 307 / 4e-102 AT2G13650 394 / 5e-138 golgi nucleotide sugar transporter 1 (.1.2.3) Lus10005864 [exp] 64 / 8e-11 AT5G58850 209 / 3e-63 myb domain protein 119 (.1) Lus10020119 [exp] 62 / 2e-10 AT4G31600 530 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1), UDP-N-acetylglucosamine (UAA) transporter family (.2) Lus10017759 [exp] 61 / 4e-10 AT5G19980 495 / 2e-177 golgi nucleotide sugar transporter 4 (.1) Lus10026922 [exp] 61 / 5e-10 AT4G31600 517 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1), UDP-N-acetylglucosamine (UAA) transporter family (.2) Lus10033058 [exp] 59 / 2e-09 AT5G19980 492 / 2e-176 golgi nucleotide sugar transporter 4 (.1) Lus10025645 [exp] 59 / 2e-09 AT1G21870 563 / 0.0 golgi nucleotide sugar transporter 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G044000 [exp] 461 / 2e-162 AT1G07290 472 / 5e-167 golgi nucleotide sugar transporter 2 (.1) Potri.007G106400 [exp] 367 / 4e-125 AT2G13650 513 / 0.0 golgi nucleotide sugar transporter 1 (.1.2.3) Potri.005G062900 [exp] 367 / 5e-125 AT2G13650 534 / 0.0 golgi nucleotide sugar transporter 1 (.1.2.3) Potri.006G270700 [exp] 67 / 5e-12 AT4G31600 450 / 3e-160 UDP-N-acetylglucosamine (UAA) transporter family (.1), UDP-N-acetylglucosamine (UAA) transporter family (.2) Potri.018G009400 [exp] 63 / 7e-11 AT4G31600 447 / 3e-159 UDP-N-acetylglucosamine (UAA) transporter family (.1), UDP-N-acetylglucosamine (UAA) transporter family (.2) Potri.018G071700 [exp] 59 / 1e-09 AT5G19980 484 / 6e-173 golgi nucleotide sugar transporter 4 (.1) Potri.006G255400 [exp] 58 / 3e-09 AT4G32272 438 / 1e-154 Nucleotide/sugar transporter family protein (.1.2) Potri.018G026600 [exp] 56 / 1e-08 AT4G32272 493 / 2e-176 Nucleotide/sugar transporter family protein (.1.2) Potri.018G127400 [exp] 56 / 2e-08 AT4G32272 431 / 4e-152 Nucleotide/sugar transporter family protein (.1.2) Potri.005G177200 [exp] 53 / 2e-07 AT1G77610 561 / 0.0 EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF03151 [flax] [poplar] TPT Triose-phosphate Transporter family
Representative CDS sequence Show only first row Show all	>Lus10001205 pacid=23173053 polypeptide=Lus10001205 locus=Lus10001205.g ID=Lus10001205.BGIv1.0 annot-version=v1.0 ATGTCTGATTTGAAGTTGCAAGTTCTGGTCCCTAAAGATCACGATGAAGAAGCAGGAACTGTTACCACTTCTCTCAATGGAGATCAGTTGACTCCTTCAA GTCTTCATAGCTCAATTGGGAGTTTCGCGGAACGAAGAGCTGTTGGTGACAGGTTTCGCCATACGTCATATGCTGACAATGTTGGGGGCGAAAAACGAGC AGGGAAGAAGTCAGGGCCTCTATTGGCAGGAGCAGCTTACTGCGTTTCTTCTTGCAGCATGATCTTGTTGAATAAGGTTGTTCTATCAACCTACAACTTC AATGCAGGCACATCTCTAATGCTCTATCAGAATCTCATCTGTTGTCTGGTTGTTGCTCTCTTGGGTCTGTGTGGAGTAGTTACGGTTGAAAAGCTCAATT GGAAGCTAGTGAAGCTATGGATTCCAGTCAACTTAATCTTTGTTGGCATGCTTGTTTCAGGCATGTACAGTCTGAAATACATAAATGTTGCAATGGTGAC AATTTTGAAGAATATGACAAATATCATCACGGCAATTGGAGAACTATACATCTTCCGCAAACATCAGAATCAGAAAGTATGGACCGCCATGTTATTGATG ATCATTTCAGCTGTTAGTGGTGGCATAACGGATCTCTCCTTTGATGCAACTGGCTACGCATGGCAAACTGCCAACTGCATCTTAACTGCTAGCTACTCAC TGACACTGCGACGAGTGATGGACAAGGCAAAGCAGACAACAAAGACGGGAACCCTAAATGAAATTTCAATGGTGTTACTTAACAATCTGTTATCTCTTCC CTTTGCTGTCTGGTTGATTTTGCTTGGTGGGGAATGGAGATATGTAATTACCACGGATGTGATAGAGTTACCAATGTTCTGGGTGGTGGCAACCGTCAGT GGGTTACTTGGTCTTGCAATTAGCTTCACCTCCATGTGGTTCTTACATCAAACAAGCCCTACCACTTACAGCCTAGTCGGTTCATTGAACAAGATACCTA TATCTCTGGCGGGTCTGGCACTGTTCAAGAAAGCTGGTGAGGCTGGGGAGGATGTTCGGGACAAACAAATGGGCGCATATAGCGGAGAAGCTGAGTGGGA GAGCCGGCAAGCAGTGCCGGGAGAGGTGGCACAACCATCTGCGCCTAACATCAGGGTATTTGTGACATGGTATGATCTCTTAGAATCTATTGCTAGCTAG
AA sequence Show only first row Show all	>Lus10001205 pacid=23173053 polypeptide=Lus10001205 locus=Lus10001205.g ID=Lus10001205.BGIv1.0 annot-version=v1.0 MSDLKLQVLVPKDHDEEAGTVTTSLNGDQLTPSSLHSSIGSFAERRAVGDRFRHTSYADNVGGEKRAGKKSGPLLAGAAYCVSSCSMILLNKVVLSTYNF NAGTSLMLYQNLICCLVVALLGLCGVVTVEKLNWKLVKLWIPVNLIFVGMLVSGMYSLKYINVAMVTILKNMTNIITAIGELYIFRKHQNQKVWTAMLLM IISAVSGGITDLSFDATGYAWQTANCILTASYSLTLRRVMDKAKQTTKTGTLNEISMVLLNNLLSLPFAVWLILLGGEWRYVITTDVIELPMFWVVATVS GLLGLAISFTSMWFLHQTSPTTYSLVGSLNKIPISLAGLALFKKAGEAGEDVRDKQMGAYSGEAEWESRQAVPGEVAQPSAPNIRVFVTWYDLLESIAS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07290		GONST2	golgi nucleotide sugar transpo...		Lus10001205 [exp]	0	1
AT1G12650			unknown protein		Lus10017837 [exp]	4.0	0.8347
AT4G35987			S-adenosyl-L-methionine-depend...		Lus10028446 [exp]	4.0	0.8301
AT1G30620		MURUS4, HSR8, U...	UDP-D-XYLOSE 4-EPIMERASE 1, MU...		Lus10003496 [exp]	4.9	0.8278
AT5G42700	B3		AP2/B3-like transcriptional fa...		Lus10024689 [exp]	6.9	0.7818
AT1G12650			unknown protein		Lus10024493 [exp]	7.7	0.7977
AT4G30900			DNAse I-like superfamily prote...		Lus10022154 [exp]	11.7	0.8024
AT3G61415		ASK21	SKP1-like 21 (.1.2)		Lus10014770 [exp]	17.7	0.7420
AT1G77280			Protein kinase protein with ad...		Lus10024154 [exp]	23.6	0.7289
AT2G04480			unknown protein		Lus10001750 [exp]	27.2	0.7444
AT4G36290		CRT1	compromised recognition of TCV...		Lus10014276 [exp]	28.2	0.7883

Compare expression of checked genes

Lus10001205 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.