Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12720 214 / 4e-68 MYB ATMYB67, AtY53 myb domain protein 67 (.1) AT1G57560 204 / 6e-64 MYB ATMYB50 myb domain protein 50 (.1) AT5G26660 205 / 7e-64 MYB ATMYB4, ATMYB86 myb domain protein 86 (.1) AT1G09540 202 / 1e-62 MYB AtMYB61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) AT4G01680 196 / 4e-62 MYB ATMYB55 myb domain protein 55 (.1.2.3) AT3G13890 192 / 5e-59 MYB ATMYB26, MS35 MALE STERILE 35, myb domain protein 26 (.1.2) AT3G61250 179 / 2e-54 MYB LMI2, ATMYB17 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) AT2G16720 177 / 2e-54 MYB AtY49, AtMYB7 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) AT4G22680 177 / 3e-54 MYB ATMYB85 myb domain protein 85 (.1) AT4G12350 177 / 4e-54 MYB ATMYB42 myb domain protein 42 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038395 [exp] 509 / 0 AT3G12720 233 / 2e-75 myb domain protein 67 (.1) Lus10038022 [exp] 198 / 4e-60 AT4G01680 273 / 8e-90 myb domain protein 55 (.1.2.3) Lus10015608 [exp] 195 / 1e-59 AT3G13890 249 / 8e-80 MALE STERILE 35, myb domain protein 26 (.1.2) Lus10040139 [exp] 180 / 5e-56 AT5G16770 231 / 9e-76 myb domain protein 9 (.1.2) Lus10001093 [exp] 181 / 9e-55 AT5G16770 232 / 4e-74 myb domain protein 9 (.1.2) Lus10041142 [exp] 179 / 4e-54 AT1G34670 315 / 2e-106 myb domain protein 93 (.1) Lus10036472 [exp] 178 / 6e-54 AT5G10280 307 / 1e-103 myb domain protein 92 (.1) Lus10027197 [exp] 174 / 2e-53 AT1G66230 249 / 6e-83 myb domain protein 20 (.1) Lus10038913 [exp] 173 / 6e-53 AT1G66230 247 / 3e-82 myb domain protein 20 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G155700 [exp] 230 / 9e-74 AT3G12720 240 / 1e-77 myb domain protein 67 (.1) Potri.001G075400 [exp] 225 / 5e-72 AT3G12720 246 / 6e-80 myb domain protein 67 (.1) Potri.008G081600 [exp] 221 / 3e-70 AT3G12720 262 / 2e-86 myb domain protein 67 (.1) Potri.010G174500 [exp] 214 / 2e-67 AT3G12720 244 / 3e-79 myb domain protein 67 (.1) Potri.012G084100 [exp] 209 / 2e-65 AT5G26660 253 / 1e-81 myb domain protein 86 (.1) Potri.015G082700 [exp] 207 / 1e-64 AT1G57560 254 / 2e-82 myb domain protein 50 (.1) Potri.013G001000 [exp] 206 / 3e-63 AT1G09540 382 / 1e-130 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) Potri.005G001600 [exp] 203 / 3e-62 AT1G09540 376 / 1e-128 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) Potri.002G185900 [exp] 200 / 9e-61 AT1G09540 291 / 5e-95 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) Potri.014G111200 [exp] 199 / 2e-60 AT4G01680 282 / 3e-93 myb domain protein 55 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10001226 pacid=23148477 polypeptide=Lus10001226 locus=Lus10001226.g ID=Lus10001226.BGIv1.0 annot-version=v1.0 ATGCAACGTCCGAAGACGGCGGCGACGACAGGACATAAGTGCTGTACGAAGCAGAAAGTGAGGAAAGGGCTTTGGTCTCCTGATGAAGATGAGAGGCTCT TCCACTTCATCACCTCCAACGGCCACCCTTCTTGGAGCTCTGTTCCCAAGCTCGCTGGATTACAAAGGTGTGGAAAGAGTTGTAGGTTGAGATGGCTAAA CTATTTACGGCCGGATCTCAAGAGGGGAGGCTTCACTCATAAAGAAGAGAGAACCATTATCGACACTCATCGGATGTTAGGGAACAGATGGGCTCAAATA GCTAAGTATTTGCCTGGTCGGACAGACAACGAGATTAAAAACTTTTGGAACTCCTATGTAAAGAAGAAGCTCATTTCCCAAGGCATAGATCCGAACACCC ACAATCAATTAAAAGTTAGCTCACAGTCAGCCACGACATCTTCTTATTCCTCTTCAACATCCTCGTTGATCTTCAACGTGACTCCTAATCAAGAACAAAC GACGTCGTCGAATATTGTTAACCTCCCATCAATATTCTTCCCGTTTAATGTGGACTATGACGATACTATCAACATCCGTCCATTAATAACGCCAACGACG ACAAATAGGGTTGGCCATGAGATTATCGATGATGGACTATGGGGCTATGGACCAGGGTTACAATCCAACGAGAAAGTCGTCCATCATCAAGTTCAACCGA CATTCTCGTTGGATTCGAAGTCCGGCGTTAAATTTCAAGGCGACGGTAGTGTGGAGTGGGAGATGAACGATGATTCGTTCGAGGGATCGAACTTGTTTGA TTTTGATTTTGGGGAACCCGCCACGAATCATCCAGCGGGGCTGGAGGAGATTATTGCTACTAACTACAGTGGTAATGATGAGCTGTGGGATGTATTATAG
AA sequence Show only first row Show all	>Lus10001226 pacid=23148477 polypeptide=Lus10001226 locus=Lus10001226.g ID=Lus10001226.BGIv1.0 annot-version=v1.0 MQRPKTAATTGHKCCTKQKVRKGLWSPDEDERLFHFITSNGHPSWSSVPKLAGLQRCGKSCRLRWLNYLRPDLKRGGFTHKEERTIIDTHRMLGNRWAQI AKYLPGRTDNEIKNFWNSYVKKKLISQGIDPNTHNQLKVSSQSATTSSYSSSTSSLIFNVTPNQEQTTSSNIVNLPSIFFPFNVDYDDTINIRPLITPTT TNRVGHEIIDDGLWGYGPGLQSNEKVVHHQVQPTFSLDSKSGVKFQGDGSVEWEMNDDSFEGSNLFDFDFGEPATNHPAGLEEIIATNYSGNDELWDVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12720	MYB	ATMYB67, AtY53	myb domain protein 67 (.1)		Lus10001226 [exp]	0	1
AT5G35200			ENTH/ANTH/VHS superfamily prot...		Lus10003642 [exp]	2.2	0.8901
AT3G59440			Calcium-binding EF-hand family...		Lus10020171 [exp]	6.8	0.8516
AT5G66430			S-adenosyl-L-methionine-depend...		Lus10024671 [exp]	7.5	0.7543
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10034666 [exp]	10.5	0.8233
					Lus10000576 [exp]	15.2	0.7241
AT5G66040		STR16	sulfurtransferase protein 16 (...		Lus10005635 [exp]	20.2	0.8096
AT1G80730	C2H2ZnF	ATZFP1, ZFP1	ARABIDOPSIS THALIANA ZINC-FING...		Lus10008698 [exp]	22.4	0.7149
AT5G04220		SYT3, NTMCTYPE1...	synaptotagmin 3, Calcium-depen...		Lus10026515 [exp]	24.0	0.8072
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10029318 [exp]	25.1	0.7904
AT2G27550		ATC	centroradialis (.1)		Lus10043385 [exp]	30.3	0.7739

Compare expression of checked genes

Lus10001226 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.