Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50150 581 / 0 Protein of Unknown Function (DUF239) (.1) AT1G70550 550 / 0 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT1G10750 543 / 0 Protein of Unknown Function (DUF239) (.1) AT1G23340 543 / 0 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT1G55360 436 / 2e-151 Protein of Unknown Function (DUF239) (.1) AT3G13510 429 / 9e-149 Protein of Unknown Function (DUF239) (.1) AT5G18460 429 / 2e-148 Protein of Unknown Function (DUF239) (.1) AT5G56530 422 / 8e-146 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT2G44210 409 / 1e-140 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT2G44220 365 / 8e-124 Protein of Unknown Function (DUF239) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042092 [exp] 736 / 0 AT5G50150 540 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10013046 [exp] 560 / 0 AT1G10750 642 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10029116 [exp] 559 / 0 AT1G10750 642 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10039949 [exp] 556 / 0 AT5G50150 575 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10027683 [exp] 555 / 0 AT5G50150 575 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10004766 [exp] 437 / 3e-151 AT5G18460 603 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10013410 [exp] 426 / 1e-147 AT3G13510 708 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10003100 [exp] 422 / 6e-145 AT5G18460 593 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10010315 [exp] 363 / 4e-123 AT3G13510 626 / 0.0 Protein of Unknown Function (DUF239) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G080300 [exp] 592 / 0 AT5G50150 637 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.012G088300 [exp] 583 / 0 AT5G50150 592 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.010G044300 [exp] 582 / 0 AT1G70550 664 / 0.0 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) Potri.008G188000 [exp] 574 / 0 AT1G70550 661 / 0.0 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) Potri.013G050100 [exp] 448 / 5e-156 AT5G18460 635 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.003G221200 [exp] 442 / 5e-154 AT1G55360 716 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.019G024100 [exp] 438 / 5e-152 AT5G18460 622 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.001G003800 [exp] 430 / 5e-149 AT1G55360 689 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.001G233000 [exp] 426 / 3e-147 AT3G13510 621 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.006G233600 [exp] 235 / 5e-73 AT5G25950 310 / 3e-102 Protein of Unknown Function (DUF239) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03080 [flax] [poplar] Neprosin Neprosin
Representative CDS sequence Show only first row Show all	>Lus10001248 pacid=23166292 polypeptide=Lus10001248 locus=Lus10001248.g ID=Lus10001248.BGIv1.0 annot-version=v1.0 ATGGCTGCTTCTGCTACTGCTCCTTTCTCTCTTCCTGTGCTCCAAATTTTGGTCAACTTGCTACTTGTTGGCTTTCTCTGTTGCTTACCAGCTGGAGTTT TGTCGGATTTTGAGTCCAACCGGACGTTCTTGCCGAGAATGCAGCTTAAGAAAGTCAATGCTTACCTTAACAACATTACCAAGCCAGCTGTCAAGTCAAT TCAGAGTCCAGATGGTGATGTGATCGACTGTGTTCTATCCCATCTCCAACCAGCATTTGATCATCCCAAGCTCAAAGGACATAAACCCTTGGATCCGCCA CCGGAGAGGCCAAATGAGGGAAATCAGACATCCGAATCAATGACGGAAAGCTTCCAGCTGTGGACTCACTCAGGAGAATCATGTCCAGAAGGGACTGTTC CAATCAGAAGAACTACTGAAAAAGATGTCCTCAGAGCAAACTCACTGGCCAGATTTGGGAAGAAATTCGTAAGACATTCGAGGAGGGACTCGACCCAAAG CGGCCATGAGCATGCAGTGGTGTTTGTGAATGGAGAACAATACTACGGAGCAAAGGCAAACATAAACGTGTGGGCACCTAGAGTTACTGATCCATCTGAA TTCAGTTTGTCACAAATATGGGTCATCTCCGGCTCTTTTCGGAATGATCTCAACACCATTGAAGCTGGTTGGCAGGCAAGAACAAGATTACTTGACACCC AAGCCAACTCCATTTTTGTGAGTCCTGAATTGTATGGAGACAGTTATCCAAGATTCTTCACCTACTGGACTACGGATGCATACGAAACAACAGGATGCTA CAACTTGCTATGTTCAGGGTTTGTTCAAACCAACAACAGGATTGCCATTGGTGCTGCTATTTCTCCTAGATCTTCTTACCGCGGAAAACAGTTCGATATC AACCTTATGATTTGGAAGGATCCGAAGCACGGGCACTGGTGGCTACAGTACGGACCGAGACTGGTAGTGGGATACTGGCCGTGGAATCTGTTCAGCCACC TGAGGAGCCATGCGAGCATGGTGCAGTTCGGAGGCGAGATAGTGAACTCGAGATCGACTGGAGTCCACACTTACACGCAGATGGGGAGCGGGAAATTCGG GGAAGAAGGGTATGGGAAGGCATCCTACTTCAGGAACTTGAAGACCGTGGATTGGGACAACAATTTGCTGCCTATTAGCAATAACAAGCTACAAGTGTTG GCAGATCGGCCTAATTGTTATGATGTTAAGCAAGGGAGTAGTAGTGATTGGGGTAATTACTTTTACTATGGTGGACCTGGTAGGAATGTTAGATGCCCTT AA
AA sequence Show only first row Show all	>Lus10001248 pacid=23166292 polypeptide=Lus10001248 locus=Lus10001248.g ID=Lus10001248.BGIv1.0 annot-version=v1.0 MAASATAPFSLPVLQILVNLLLVGFLCCLPAGVLSDFESNRTFLPRMQLKKVNAYLNNITKPAVKSIQSPDGDVIDCVLSHLQPAFDHPKLKGHKPLDPP PERPNEGNQTSESMTESFQLWTHSGESCPEGTVPIRRTTEKDVLRANSLARFGKKFVRHSRRDSTQSGHEHAVVFVNGEQYYGAKANINVWAPRVTDPSE FSLSQIWVISGSFRNDLNTIEAGWQARTRLLDTQANSIFVSPELYGDSYPRFFTYWTTDAYETTGCYNLLCSGFVQTNNRIAIGAAISPRSSYRGKQFDI NLMIWKDPKHGHWWLQYGPRLVVGYWPWNLFSHLRSHASMVQFGGEIVNSRSTGVHTYTQMGSGKFGEEGYGKASYFRNLKTVDWDNNLLPISNNKLQVL ADRPNCYDVKQGSSSDWGNYFYYGGPGRNVRCP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50150			Protein of Unknown Function (D...		Lus10001248 [exp]	0	1
AT5G50150			Protein of Unknown Function (D...		Lus10042092 [exp]	1.0	0.9382
AT2G40820			unknown protein		Lus10027293 [exp]	3.2	0.8853
AT3G59680			unknown protein		Lus10025594 [exp]	4.6	0.8352
AT3G50780			unknown protein		Lus10022484 [exp]	6.3	0.8351
AT5G50150			Protein of Unknown Function (D...		Lus10039949 [exp]	6.5	0.8772
AT3G52900			Family of unknown function (DU...		Lus10043423 [exp]	8.0	0.8185
AT5G60890	MYB	AtMYB34, MYB34,...	ALTERED TRYPTOPHAN REGULATION ...		Lus10015713 [exp]	10.2	0.7841
AT1G62360	HD	WAM1, WAM, SHL,...	WALDMEISTER 1, WALDMEISTER, SH...		Lus10035320 [exp]	11.4	0.8458
AT2G27035		AtENODL20	early nodulin-like protein 20 ...		Lus10005229 [exp]	11.8	0.8460
AT3G54030			Protein kinase protein with te...		Lus10021112 [exp]	11.8	0.8345

Compare expression of checked genes

Lus10001248 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.