Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10020 480 / 3e-170 ATHSD5 hydroxysteroid dehydrogenase 5 (.1) AT5G50700 236 / 1e-74 HSD1 hydroxysteroid dehydrogenase 1 (.1) AT5G50600 236 / 1e-74 ATHSD1 hydroxysteroid dehydrogenase 1 (.1) AT3G47350 215 / 3e-67 ATHSD2 hydroxysteroid dehydrogenase 2 (.1.2) AT5G50590 214 / 8e-67 ATHSD4 hydroxysteroid dehydrogenase 4 (.1) AT5G50690 214 / 8e-67 ATHSD7 hydroxysteroid dehydrogenase 7 (.1) AT3G47360 206 / 1e-63 ATHSD3 hydroxysteroid dehydrogenase 3 (.1) AT5G50770 201 / 2e-61 ATHSD6 hydroxysteroid dehydrogenase 6 (.1) AT3G03330 82 / 4e-17 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G05260 70 / 3e-13 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009467 [exp] 697 / 0 AT4G10020 501 / 1e-178 hydroxysteroid dehydrogenase 5 (.1) Lus10041045 [exp] 563 / 0 AT4G10020 506 / 3e-180 hydroxysteroid dehydrogenase 5 (.1) Lus10006178 [exp] 526 / 0 AT4G10020 485 / 8e-173 hydroxysteroid dehydrogenase 5 (.1) Lus10032556 [exp] 248 / 1e-79 AT5G50600 411 / 4e-144 hydroxysteroid dehydrogenase 1 (.1) Lus10016748 [exp] 249 / 4e-78 AT5G50770 360 / 4e-122 hydroxysteroid dehydrogenase 6 (.1) Lus10043187 [exp] 244 / 4e-78 AT5G50600 404 / 4e-141 hydroxysteroid dehydrogenase 1 (.1) Lus10022441 [exp] 240 / 1e-76 AT5G50770 349 / 3e-120 hydroxysteroid dehydrogenase 6 (.1) Lus10001511 [exp] 226 / 5e-71 AT5G50600 388 / 5e-135 hydroxysteroid dehydrogenase 1 (.1) Lus10031448 [exp] 224 / 5e-70 AT5G50600 378 / 3e-131 hydroxysteroid dehydrogenase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G073200 [exp] 508 / 0 AT4G10020 494 / 4e-176 hydroxysteroid dehydrogenase 5 (.1) Potri.013G100200 [exp] 502 / 1e-179 AT4G10020 506 / 0.0 hydroxysteroid dehydrogenase 5 (.1) Potri.012G102000 [exp] 240 / 8e-77 AT5G50700 279 / 7e-93 hydroxysteroid dehydrogenase 1 (.1) Potri.015G100000 [exp] 229 / 2e-72 AT5G50690 298 / 8e-101 hydroxysteroid dehydrogenase 7 (.1) Potri.016G048800 [exp] 226 / 2e-71 AT5G50690 284 / 2e-95 hydroxysteroid dehydrogenase 7 (.1) Potri.015G099900 [exp] 224 / 1e-70 AT5G50700 285 / 5e-95 hydroxysteroid dehydrogenase 1 (.1) Potri.012G101900 [exp] 221 / 1e-69 AT5G50690 287 / 9e-97 hydroxysteroid dehydrogenase 7 (.1) Potri.016G048900 [exp] 191 / 1e-57 AT5G50690 275 / 2e-91 hydroxysteroid dehydrogenase 7 (.1) Potri.007G086600 [exp] 72 / 6e-14 AT5G10050 416 / 2e-147 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G149201 [exp] 71 / 1e-13 AT1G54870 378 / 3e-132 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10001280 pacid=23166370 polypeptide=Lus10001280 locus=Lus10001280.g ID=Lus10001280.BGIv1.0 annot-version=v1.0 ATGGATCTGGTGAGCTCGGCGATGAACCTGTTCGTCCCGCCGGCGAGCCTGGTGGTGATGGCTTGTGCTTGGCCTGCCTTGTGTTTCATCAACGGCTGTG AGTGGCTCTACAAGAGCTACTACGCCGGTGAGGATATGGAGGACAAAGTTGTCATTGTCACCGGCGCTTCTTCCGGCATCGGAGAGCAAATCGCGTACGA ATACGCGAAGAGGAGGGTGAACCTAGTGTTGGTTGCTCGGAGGGAGACGAGGCTCCGCTGGATCAGCGAGAGAGCTAGATACTTGGGTGCTAAAAATGTC ATGATCGTGGCCGCGGATGTGGTCAAGGAAGACGATTGCCGAAGGTTCATCAACCAGGCGGTCAGCTACTACGGTCGTCTGGATCATTTGGTGAACACAG TTAGCTTGGCACATACGTTTTACTTGGAAGATGCCGCGGACACCTCTGTGTTTCCTCATATGTTGGACATCAACTTTTGGGGAAATGTGTATCCGGCGTA CGTCGCTCTTCCATATCTCCATCAAACCAATGGAAGAATCGTCGTAAATGCTGCCGTTGATACCTGGCTACCTCTTCCAAGGATGAGCATATACGCCGCT GCGAAAGCTGCACTGATAAACTTCTATGACACATTGAGGTTCGAAGTGAACGACGAAATCGGGGTCACAATCGCAACACACGGGTGGGTTGGCGGCAGTG AAATGAGCAGCGGGAGCAAGTTCATGGTCGAAGAAGGCGCCACCGAGATGCATTGGAGAGAAGAAGGCAACGGAGTGAACGGTCCGCTCGAGGACTACGC GAAGATGATCGTATCGGGAGCTTGTCGTGGGGACCACTACGTTAAGTACCCGAAATGGTACGACACCTTCCTCTTGTACAGGTACTTTGCCCCTGGCGTC CTGAACTGGACACTCAGGCAGCTCCTCGCCTCACATGGAGCGAGGAGGATGCCCTCTCTTATCGGCGTGGGGACTAGGCCATTGTTAGAAGGTGGTAGCG GCGGTGGTGGTGGTGGCGGCGACAGTGGTGGTGACAGCGGAAGCAGCTCGCCCAGCCGGGTCGCTGCTAGCCCTGTGGGAAGCAGCTCGCCCGGGCGCCT GGCTGCTAGTCCGGTCGGATTCTCGCCAAGAAGTCCTGGGCGCATGCAGAGACTTGAGTGA
AA sequence Show only first row Show all	>Lus10001280 pacid=23166370 polypeptide=Lus10001280 locus=Lus10001280.g ID=Lus10001280.BGIv1.0 annot-version=v1.0 MDLVSSAMNLFVPPASLVVMACAWPALCFINGCEWLYKSYYAGEDMEDKVVIVTGASSGIGEQIAYEYAKRRVNLVLVARRETRLRWISERARYLGAKNV MIVAADVVKEDDCRRFINQAVSYYGRLDHLVNTVSLAHTFYLEDAADTSVFPHMLDINFWGNVYPAYVALPYLHQTNGRIVVNAAVDTWLPLPRMSIYAA AKAALINFYDTLRFEVNDEIGVTIATHGWVGGSEMSSGSKFMVEEGATEMHWREEGNGVNGPLEDYAKMIVSGACRGDHYVKYPKWYDTFLLYRYFAPGV LNWTLRQLLASHGARRMPSLIGVGTRPLLEGGSGGGGGGGDSGGDSGSSSPSRVAASPVGSSSPGRLAASPVGFSPRSPGRMQRLE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10020		ATHSD5	hydroxysteroid dehydrogenase 5...		Lus10001280 [exp]	0	1
AT1G26420			FAD-binding Berberine family p...		Lus10023368 [exp]	2.0	1.0000
AT4G01830		ABCB5, PGP5	ATP-binding cassette B5, P-gly...		Lus10004529 [exp]	2.8	1.0000
					Lus10024550 [exp]	3.2	1.0000
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Lus10034995 [exp]	3.6	1.0000
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Lus10028619 [exp]	4.2	1.0000
					Lus10011061 [exp]	4.2	1.0000
					Lus10011759 [exp]	4.6	1.0000
					Lus10010609 [exp]	4.7	1.0000
AT1G48120			hydrolases;protein serine/thre...		Lus10008569 [exp]	4.7	1.0000
					Lus10029192 [exp]	5.4	1.0000

Compare expression of checked genes

Lus10001280 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.