Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19790 90 / 6e-23 AP2_ERF RAP2.11 related to AP2 11 (.1) AT1G03800 63 / 1e-12 AP2_ERF AtERF10 ARABIDOPSIS THALIANA RF DOMAIN PROTEIN 10, ERF domain protein 10 (.1) AT4G11140 63 / 1e-12 AP2_ERF CRF1 cytokinin response factor 1 (.1) AT4G23750 61 / 6e-12 AP2_ERF TMO3, CRF2 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) AT1G72360 61 / 6e-12 AP2_ERF AtERF73, HRE1 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 1, ethylene response factor 73, Integrase-type DNA-binding superfamily protein (.1.2.3) AT5G53290 61 / 7e-12 AP2_ERF CRF3 cytokinin response factor 3 (.1) AT5G18560 61 / 1e-11 AP2_ERF PUCHI Integrase-type DNA-binding superfamily protein (.1) AT5G50080 59 / 2e-11 AP2_ERF ERF110 ethylene response factor 110 (.1) AT1G53170 59 / 2e-11 AP2_ERF ATERF8, ATERF-8 ETHYLENE RESPONSE ELEMENT BINDING FACTOR 4, ethylene response factor 8 (.1) AT1G28370 58 / 2e-11 AP2_ERF AtERF11 ERF domain protein 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012703 [exp] 150 / 1e-44 AT5G19790 119 / 3e-31 related to AP2 11 (.1) Lus10036793 [exp] 100 / 1e-25 AT5G19790 115 / 4e-29 related to AP2 11 (.1) Lus10037137 [exp] 100 / 2e-25 AT5G19790 116 / 2e-29 related to AP2 11 (.1) Lus10030430 [exp] 95 / 6e-24 AT5G19790 115 / 1e-29 related to AP2 11 (.1) Lus10013614 [exp] 91 / 1e-22 AT5G19790 148 / 6e-43 related to AP2 11 (.1) Lus10010652 [exp] 88 / 1e-21 AT5G19790 155 / 6e-46 related to AP2 11 (.1) Lus10039171 [exp] 84 / 3e-20 AT5G19790 133 / 3e-37 related to AP2 11 (.1) Lus10013764 [exp] 84 / 3e-20 AT5G19790 132 / 6e-37 related to AP2 11 (.1) Lus10036556 [exp] 79 / 7e-20 AT5G19790 104 / 2e-28 related to AP2 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G087800 [exp] 100 / 7e-26 AT5G19790 89 / 3e-20 related to AP2 11 (.1) Potri.008G091300 [exp] 98 / 5e-25 AT5G19790 80 / 5e-17 related to AP2 11 (.1) Potri.003G220200 [exp] 90 / 1e-22 AT5G19790 164 / 1e-49 related to AP2 11 (.1) Potri.013G056700 [exp] 87 / 1e-21 AT5G19790 105 / 4e-27 related to AP2 11 (.1) Potri.019G036100 [exp] 87 / 1e-21 AT5G19790 98 / 3e-24 related to AP2 11 (.1) Potri.001G004700 [exp] 86 / 6e-21 AT5G19790 112 / 1e-29 related to AP2 11 (.1) Potri.001G453100 [exp] 81 / 5e-19 AT5G19790 71 / 5e-14 related to AP2 11 (.1) Potri.014G076702 [exp] 78 / 5e-18 AT5G19790 74 / 5e-15 related to AP2 11 (.1) Potri.002G153500 [exp] 76 / 2e-17 AT5G19790 79 / 6e-17 related to AP2 11 (.1) Potri.011G148900 [exp] 75 / 7e-17 AT5G19790 65 / 5e-12 related to AP2 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10001298 pacid=23165460 polypeptide=Lus10001298 locus=Lus10001298.g ID=Lus10001298.BGIv1.0 annot-version=v1.0 ATGGGCAGGAAGAGAAAAGTTGCGGCAGCAGTAGCTGCAACTGATCAAACATCATCCGGCAGCGAGAACGATCTGCAGGTCAACGACATCGACCGAAGAA CGAGGAATAAGAGATTCGTAGGGGTGAGGCAGAGGCCATCGGGGAGATGGGTGGCGGAGATCAAAGACACGGTCCAGAAAATCAGAGTGTGGTTAGGGAC ATTCGACACCGCCGAGGAAGCCGCCAGAGCTTACGATGAAGCCGCCTGTCTCCTCCGTGGCTCCAACACCAGGACCAACTTCTGGCCTTCTTCTAATCCT TCTTCTTCTTCTTCTTCCCACCACCAATATGGCCATCCCGCTAGTACGGCGGCGTTTTGTTCAAACTATACATTTTGTAACTTTGGCGGTTGA
AA sequence Show only first row Show all	>Lus10001298 pacid=23165460 polypeptide=Lus10001298 locus=Lus10001298.g ID=Lus10001298.BGIv1.0 annot-version=v1.0 MGRKRKVAAAVAATDQTSSGSENDLQVNDIDRRTRNKRFVGVRQRPSGRWVAEIKDTVQKIRVWLGTFDTAEEAARAYDEAACLLRGSNTRTNFWPSSNP SSSSSSHHQYGHPASTAAFCSNYTFCNFGG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10001298 [exp]	0	1
AT5G48390		ATZIP4	Tetratricopeptide repeat (TPR)...		Lus10043032 [exp]	4.2	0.6175
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10009928 [exp]	4.7	0.7020
					Lus10014650 [exp]	4.8	0.7090
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10003585 [exp]	10.2	0.6768
AT3G05950			RmlC-like cupins superfamily p...		Lus10035280 [exp]	11.4	0.6768
AT3G54320	AP2_ERF	ATWRI1, ASML1, ...	WRINKLED 1, WRINKLED, ACTIVATO...		Lus10013268 [exp]	12.5	0.6768
AT3G29590		AT5MAT	HXXXD-type acyl-transferase fa...		Lus10003345 [exp]	13.5	0.6768
AT3G04380		SDG31, SUVR4	SET DOMAIN PROTEIN 31, SET-dom...		Lus10005476 [exp]	15.3	0.6609
AT4G25950		VATG3	vacuolar ATP synthase G3 (.1)		Lus10009452 [exp]	16.0	0.6239
					Lus10027457 [exp]	17.9	0.6577

Compare expression of checked genes

Lus10001298 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.