Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29040 642 / 0 RPT2A regulatory particle AAA-ATPase 2A (.1) AT2G20140 642 / 0 RPT2b regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) AT5G58290 334 / 2e-112 RPT3 regulatory particle triple-A ATPase 3 (.1) AT5G19990 287 / 9e-94 ATSUG1, RPT6A regulatory particle triple-A ATPase 6A (.1) AT5G20000 283 / 3e-92 RPT6A AAA-type ATPase family protein (.1) AT3G05530 276 / 9e-90 ATS6A.2, RPT5A regulatory particle triple-A ATPase 5A (.1) AT1G09100 276 / 1e-89 RPT5B 26S proteasome AAA-ATPase subunit RPT5B (.1) AT1G45000 263 / 1e-84 AAA-type ATPase family protein (.1.2) AT5G43010 262 / 2e-84 RPT4A regulatory particle triple-A ATPase 4A (.1) AT1G53750 259 / 6e-83 RPT1A regulatory particle triple-A 1A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006976 [exp] 654 / 0 AT4G29040 828 / 0.0 regulatory particle AAA-ATPase 2A (.1) Lus10019995 [exp] 652 / 0 AT2G20140 827 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) Lus10011901 [exp] 643 / 0 AT2G20140 844 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) Lus10022834 [exp] 578 / 0 AT2G20140 735 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) Lus10015524 [exp] 576 / 0 AT2G20140 659 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) Lus10020654 [exp] 289 / 7e-95 AT3G05530 783 / 0.0 regulatory particle triple-A ATPase 5A (.1) Lus10017762 [exp] 287 / 1e-93 AT5G19990 797 / 0.0 regulatory particle triple-A ATPase 6A (.1) Lus10031492 [exp] 282 / 9e-92 AT3G05530 820 / 0.0 regulatory particle triple-A ATPase 5A (.1) Lus10029887 [exp] 281 / 2e-91 AT3G05530 837 / 0.0 regulatory particle triple-A ATPase 5A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G252600 [exp] 650 / 0 AT4G29040 838 / 0.0 regulatory particle AAA-ATPase 2A (.1) Potri.014G194700 [exp] 644 / 0 AT4G29040 829 / 0.0 regulatory particle AAA-ATPase 2A (.1) Potri.016G028000 [exp] 333 / 5e-112 AT5G58290 781 / 0.0 regulatory particle triple-A ATPase 3 (.1) Potri.006G031000 [exp] 330 / 1e-110 AT5G58290 771 / 0.0 regulatory particle triple-A ATPase 3 (.1) Potri.010G098300 [exp] 287 / 1e-93 AT5G19990 768 / 0.0 regulatory particle triple-A ATPase 6A (.1) Potri.008G144100 [exp] 285 / 5e-93 AT5G19990 741 / 0.0 regulatory particle triple-A ATPase 6A (.1) Potri.013G016800 [exp] 280 / 6e-91 AT3G05530 800 / 0.0 regulatory particle triple-A ATPase 5A (.1) Potri.005G025100 [exp] 279 / 8e-91 AT3G05530 795 / 0.0 regulatory particle triple-A ATPase 5A (.1) Potri.002G031400 [exp] 265 / 2e-85 AT1G45000 745 / 0.0 AAA-type ATPase family protein (.1.2) Potri.005G231700 [exp] 265 / 2e-85 AT1G45000 756 / 0.0 AAA-type ATPase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10001313 pacid=23169296 polypeptide=Lus10001313 locus=Lus10001313.g ID=Lus10001313.BGIv1.0 annot-version=v1.0 ATGGCCAATCCTAGCCGTGCACACTTAGGGGTCGGGCCATGGGACAACGACCTTCAGGAATGGGCCGCGCTCCCGGAGGCAGGAAACGCAATCAAGGATT ACTTGTTGATGGAGGAAGAGTTCGTCGCCAATCAGGAGAGGCTGAAGCCTCAGGAGGAGAAGAACGAGGAGGATCGTTCTAAGGTCGACGATCTCAGGGG CTCTCCGATGAGCGTCGGGAATCTGGAGGAGCTGATTGACGAGAACCACGCTATTGTTTCTTCCTCGGTTGGTCCGGAGTATTATGTTGGGATTTTGTCG TTCGTTGATAAGGATCAGATTGAGCCTGGCTGCGCAATTTTGATGCACAATAAGGTGCTTTCTGTTGTTGGACTACTTCAAGATGATGTTGACCCCATGG TTTCGGTGATGAAAGTTGAGAAAGCTCCGCTACAATCATACGCAGACATCGGAGGGTTGGATGCCCAAATACAAGAGATTAAGGAAGCAGTGGAGCTCCC TCTTACTCATCCTGAACTGTATGAAGACATTGGTATCAAGCCCCCTAAGGGAGTTATCCTCTACGGGGAGCCAGGAACTGGGAAAACATTACTTGCAAAG GCTGTTGCAAACTCTACATCAGCGACTTTCCTGCGTGTGGTAGGAAGTGAACTAATCCAGAAGTATCTAGGCGACGGTCCAAAACTGGTTAGGGAGTTGT TTCGAGTTGCGGATGACCTTTCACCATCCATTGTCTTCATTGACGAAATCGATGCTGTTGGCACAAAGAGGTACGATGCACATTCCGGCGACGTGAAAGT GATTCTCGCAACCAACAGAATCGAGAGCCTCGACCCCGCCCTGTTGCGTCCAGGACGAATCGACAGGAAGATTGAATTCCCTCTTCCAGACATCAAAACC CGGAGGCGCATCTTCCAGATACATACATCAAGAATGACACTAGCGGATGATGTTAACTTGGAAGAGTTTGTGATGACCAAGGATGAGTTCTCGGGGGCTG ACATCAAAGCAATTTGCACCGAGGCTGGTTTGCTTGCCTTGAGAGAGCGCCGTATGAAGGTAACTCATGCCGACTTCAAGAAGGCGAAGGACAAGGTGAT GTTCAAGAAGAAGGAAGGTGTGCCGGAAGGACTATATATGTGA
AA sequence Show only first row Show all	>Lus10001313 pacid=23169296 polypeptide=Lus10001313 locus=Lus10001313.g ID=Lus10001313.BGIv1.0 annot-version=v1.0 MANPSRAHLGVGPWDNDLQEWAALPEAGNAIKDYLLMEEEFVANQERLKPQEEKNEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILS FVDKDQIEPGCAILMHNKVLSVVGLLQDDVDPMVSVMKVEKAPLQSYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAK AVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKT RRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHADFKKAKDKVMFKKKEGVPEGLYM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29040		RPT2A	regulatory particle AAA-ATPase...		Lus10001313 [exp]	0	1
AT4G08960			phosphotyrosyl phosphatase act...		Lus10011297 [exp]	1.7	0.9425
AT2G30050			transducin family protein / WD...		Lus10011429 [exp]	2.2	0.9625
AT5G40650		SDH2-2	succinate dehydrogenase 2-2 (....		Lus10032113 [exp]	3.2	0.9508
AT1G30890			Integral membrane HRF1 family ...		Lus10027039 [exp]	4.2	0.9373
AT3G44150			unknown protein		Lus10029366 [exp]	4.5	0.9412
AT5G24400		PGL3, EMB2024	6-PHOSPHOGLUCONOLACTONASE 3, E...		Lus10022352 [exp]	5.5	0.9321
AT5G47030			ATPase, F1 complex, delta/epsi...		Lus10040130 [exp]	5.5	0.9247
AT5G11280			unknown protein		Lus10002030 [exp]	6.0	0.9339
AT2G25430			epsin N-terminal homology (ENT...		Lus10001502 [exp]	6.6	0.9187
AT4G15410		PUX5, ATB' GAMM...	serine/threonine protein phosp...		Lus10031535 [exp]	6.9	0.9183

Compare expression of checked genes

Lus10001313 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.