Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27180 404 / 7e-118 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G36930 388 / 4e-114 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G17680 335 / 5e-95 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G11250 322 / 4e-91 Disease resistance protein (TIR-NBS-LRR class) (.1) AT4G16890 322 / 1e-90 BAL, SNC1 SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1, BALL, disease resistance protein (TIR-NBS-LRR class), putative (.1) AT2G14080 316 / 5e-89 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT3G04220 299 / 2e-85 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G64070 298 / 2e-84 RLM1 RESISTANCE TO LEPTOSPHAERIA MACULANS 1, Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G46260 300 / 1e-83 disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G41540 295 / 5e-83 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004257 [exp] 1192 / 0 AT5G36930 446 / 7e-136 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10014207 [exp] 1136 / 0 AT5G36930 446 / 5e-135 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10001375 [exp] 1125 / 0 AT5G36930 464 / 3e-141 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10042165 [exp] 1017 / 0 AT5G36930 326 / 9e-94 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10023272 [exp] 965 / 0 AT5G36930 423 / 4e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10018658 [exp] 941 / 0 AT1G27180 360 / 4e-106 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10029628 [exp] 925 / 0 AT1G27180 462 / 1e-138 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10035674 [exp] 920 / 0 AT5G36930 410 / 1e-121 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10037406 [exp] 860 / 0 AT5G36930 395 / 5e-116 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G053200 [exp] 453 / 2e-136 AT1G27170 1187 / 0.0 transmembrane receptors;ATP binding (.1.2) Potri.019G052000 [exp] 445 / 7e-135 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T011750 [exp] 444 / 7e-135 AT5G36930 551 / 2e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002200 [exp] 436 / 6e-134 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T005501 [exp] 441 / 1e-133 AT5G36930 612 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G021681 [exp] 441 / 1e-133 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002400 [exp] 435 / 1e-133 AT5G36930 658 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001500 [exp] 440 / 3e-133 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.005G206400 [exp] 430 / 1e-131 AT5G36930 587 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G002500 [exp] 435 / 5e-131 AT5G17680 587 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10001366 pacid=23170146 polypeptide=Lus10001366 locus=Lus10001366.g ID=Lus10001366.BGIv1.0 annot-version=v1.0 ATGCCGTCGAAATTGTTCTCCAAGTTACTGTTTCAGCAGAGGAGACGCCGAATCCCGGACGCCTCTTCGCCGACCCCACAGCCAACTGCAGAGGATTCTT CTTCGGATCCCTTGTCCGGTTCGTCGGCTCCTCTTCCAGCTGGAGATTACGAGGTCTTCCTTAGCTTCAGAGGACCTGATAATCGCAATAACTTCGCTGA TTTCCTCTACCACTACTTGGTGCGTTCTAAAATCCGCACTTTCAGAGACAACGAGGATCTTCACAAAGGGGAGGAGATTTGGCCTGGCCTGGCTAGGGCT TTGGCTCAGTCCAAGATTTACATTCCGATTCTTTCCAGGAACTATGCCTCTAGCAAATGGTGTCTCCGGGAGCTTGCCAAAATGGTCGAATGCTGTAAGG AAAACAAAGGACACATAGTGTTGCCCATTTTTTATTTTGTGGATCCCAGGGATGTTCGCCATCAAACTGGGTCTTACAGGAAGGCATTTAGATTGCATCA GAGCAACTGCAAACATGAAACGGTGCAGGAGTGGAAAGATGCTCTGGAACAAGTTGGAGCCATGAAAGGTTGGCATGTCACCGACTTGGAAGGGCAAGGA GCTGTTGTTGACGAGGTTTTCCAAAATGTGTTGTCTCTTTTGAGCAAGAACTACACTTTAGTGACTGATGAGTTAGTTGGAGTTGATCATCATGTGGAAG AAGTGATGAAATTACTGAATTTGGGCTCAGGATGTGTGACGACTGTTGGCATTTATGGAATGGGCGGAATTGGAAAAACCACCATCGCTACAGCTGTCTA TAACAAAGTCTGCACGCTTTTTGACCGTTGTAGCTTTGTTGATGATGTAAGAGAAACATTGTCATGGAGTGATGGTATTGTCACTTTGCAGAATAAGCTC ATCTATGGCATTACGAAAGATGGCTCTCCCATTGGTAGCACAAGTGAAGGAATTCACAAGATTAAGGACAGGGTTTGTCAATACAAGGTTCTTGTAGTTC TTGATGACGTGAATGAAGAGTTTGATTTTGAAAAAATCCTTGGGTGGCGTGAGAACTTCTTCCCGGGAAGTCGGTTTATCATTACAACCAGGAACAAGAA AGTTGTGTCGTCATTGAAAAGCTGCGAGTTATATGAACCTAATGAAATGAGTTTTGACTTCTCCCTTCAGCTTTTTAGCAAGTATGCATTCAGAACGATT TCTCCTCCAGAAGATTATGAATCTCTCTCTAGAGACATCGTGACTACTGCTGCAGGGCTCCCTTTGGCTCTGAAAGTTGTAGGATCGCTTTTGTTTGAAG AAGACAAGTCAGTTTGGGAAGAAAAGTTGATGCAGTTAAAAGAAGTACCTTCAATGGAGGTTGTAGAAAAGTTAAAGATCAGCTATAATGCATTGACATA CGAGGAACAACAAATATTCCTTGATATTGCTTGTTTCTTCATTGGAAAGGACAAAGAAATTGCTTCTTATATGTGGAGAGATTGTAATTACTATCCAGTG AGTGCCATTAATGTCCTCCTTCTGAGATCTCTAATCAAAGTTGGAAAGGACCGTAAATTCAGGATGCATGATCAACTTAGAGACCTGGGGAAAGCGATTG TCCGGGAGGAGAACGTAGAAAATCAGTGGAAGCGCAGTAGGGTCTATGATCGTAGAATCTGGGACCTGGACTGCATTACTGAGGTAATGAAGGAAAACCA AGTGCGAGCCATGGAAATTTTAGGATCTGGGAAATGTTCTCTTACCGCTGAAGACATGAAGAAGTTCCCAGAGTTAAGATATCTTGTCGTAAATCGCTTA GCAGGAATAACTGGGGACTTCAATGGACTTCTATTAAATTTAAGGTGGTTGCGACTGGGGGAGGGCCCTGGGTTTCGAGAATTTTCAACATCTGCCAATC TTCACTTGGCGAAACTAATTATTCTTGATCTCTCCAGAAGCCGCATTACAAGTGAATCGGAAGCCTGGAGCCAACTCAAGATGTCGCGGAACCTGAAGGT TTTGATTCTTGATGGTTGTGATCGATTAACCAAAGTTCCTGACCTTTCTGCATATGGAAATTTGGAGATCTTAAATCTTGAAAGATGCAGTGGCATTGAC GAGGACTTAGACATTGGTAACTTGAAAAATCTTAAGGTCCTTAAGCTTCGTTTCTGTAGAATAAGGAAGTTAATTGGTGATGTTTCTATGCTTTTGAAAC TTGAGGAGATAGATGCGTCTTCGTGTAGCAACTTAGAAGAAATTCCCACTAACGTCAGAGAAATGCCGTCTCTTAAAGTCTTGAACCTGACGTCCCAAAC GAACTTTCAGGTTTCTGAGCTCCCCACAAGTTTGAAAGAACTAACCATTTCTTCTCCAGTTCCGAATCTTTTGTGGTTAAGGAACCTGGAGGAATTACAG TTTCAAGATTGTGATCATGAACTTAAAATTCCAGGAGATATATGGAAGTTATCCAAGTTGAAAACACTGAGACTGTGGCATATCAACATTACGAATCTAC TGGCTCCAGGGACGGGCTCTCTTCCATCATCTCTAAAGCACTTGTATATTGAGCATTGTCAGCAGCTGGAGAATTTACCAGATCTCTCCAATCTGAAATA TTTGATGGAACTGAGGCTCTTGTGTCCTGAGCTTCGTGAGATTCCAGGGCTTGCAGAGCTTAAATCTTTGGTTACTTTGAGCGTTTCGGACGGTCGATGC TTAAGTCATCTTGAGGGCCTTGATAACCTGCTATCTTTGACATACTTTACCATAAATGGGTGTGCAATTAAAATTCTACCCAGTTTGGCGGGTCTGAAGA ATTTACAAGCATTGAACATCTGGCAGTGCCCCCATTTGGTTGAAATCCAGGGCCTTAGTGAAAGTTTACAAGAACTTGGCATCGCTGATTGTCCTTCCCT CGAAATAATACCCAATCTGTCAAGGTTGGTCAGACTGAGGTATTTAGCTCTACAGCATTTGCAGAGCTTGCCAAATATCAATGGCCTTGAATCTCTCGAG GCTGTAGAATATTTGGAGTTTCGTGGCTGTCAATCAATAAAAGTTTTGCCTTCACTATCACAGTTAAGCAAATTGAAACACATAATCTTGAAGGACAATC GATGCTTGAGCAGGATTGCGAGCCTTAAGGGACTGAAGTTAGAGAAAGTGGAGGTTTCTGGTTGTTTATCACTGAAAAGTTGTCCGGATCTATCTGGTCA AGAGAATCTAAAGGAAGTCATCATTGATGGATGCTTGTTGTTGTTTGACATTCAGGGCCTTGACACATTAGGAGTGTCCTTGAAAGTGCTACAAGTGACT AATTGCACGTCAATTAAGAAATTACCAACCCTTCCAAATCTTGGAAGCTTAGAGATTCTGCGCCTTGAGAATTGTGAGAACTTGATAGAGGTGAAGGGAC TCGAGGCATTGGAGTTCTTGAAATTGCTGGACATGAGTGGCTGCAAGTCAATTGAGAAATTGCCAAATCTTTCGAATCTTGGATCATGCCTAAAGACCCT GTCATTAAGCAACTGCGAGAGGTTGATTGAGGTGTTTGGAATCGAGGAGTTGAGGTCCTTGAAAGTGCTGTACATGAGTGGCTGCAAGTCAATTGAGAAA TTGCCAAATCTTTCGAATCTGGGATCATGCCTAGAGAGCCTGTCATTAAGCAACTGCGACAAGTTGATCGATGTGGCAGGAATTGAGGAACTGAATTCCT TGGAAGTGCTGGACATGAATGGCTGCATGTCAATTCAGAAGTTGCCAAATCTTTCGAATCTCAGAATAAGAACCCTTTCCCTAAGCAACTGCGAGAAGTT GATCGAAGTGCCTGGACCTATGGAAATGATGTGCTTGACAGTGCTGGAGATGAATGGCTGCAAGTCGATCGAGATGCTGCAGCTCTCTAAATGCTGTTAT TTGGAGACTCTTTCTCTGAGTGGTTGCGAGAAATTGACAAGCATCTCGGGACTTGAGAAAATGAGGTATCTACGCAAACTGGACATTTCGGGGTGCAAGT TGACACACGATTTGCCAGAGTTTCGATTCGCAAAAGTTACAAGAGGAAAGATATTCCTGTCCCGCGTTCTATCAGCTTTGGATGAAGAGCTTTCAAAAGA CTGCTGCTTGGAGCGATGTGGTACCGATGCTGTCAAGTTTGCTAGAGCTGTTTGGAGCTGA
AA sequence Show only first row Show all	>Lus10001366 pacid=23170146 polypeptide=Lus10001366 locus=Lus10001366.g ID=Lus10001366.BGIv1.0 annot-version=v1.0 MPSKLFSKLLFQQRRRRIPDASSPTPQPTAEDSSSDPLSGSSAPLPAGDYEVFLSFRGPDNRNNFADFLYHYLVRSKIRTFRDNEDLHKGEEIWPGLARA LAQSKIYIPILSRNYASSKWCLRELAKMVECCKENKGHIVLPIFYFVDPRDVRHQTGSYRKAFRLHQSNCKHETVQEWKDALEQVGAMKGWHVTDLEGQG AVVDEVFQNVLSLLSKNYTLVTDELVGVDHHVEEVMKLLNLGSGCVTTVGIYGMGGIGKTTIATAVYNKVCTLFDRCSFVDDVRETLSWSDGIVTLQNKL IYGITKDGSPIGSTSEGIHKIKDRVCQYKVLVVLDDVNEEFDFEKILGWRENFFPGSRFIITTRNKKVVSSLKSCELYEPNEMSFDFSLQLFSKYAFRTI SPPEDYESLSRDIVTTAAGLPLALKVVGSLLFEEDKSVWEEKLMQLKEVPSMEVVEKLKISYNALTYEEQQIFLDIACFFIGKDKEIASYMWRDCNYYPV SAINVLLLRSLIKVGKDRKFRMHDQLRDLGKAIVREENVENQWKRSRVYDRRIWDLDCITEVMKENQVRAMEILGSGKCSLTAEDMKKFPELRYLVVNRL AGITGDFNGLLLNLRWLRLGEGPGFREFSTSANLHLAKLIILDLSRSRITSESEAWSQLKMSRNLKVLILDGCDRLTKVPDLSAYGNLEILNLERCSGID EDLDIGNLKNLKVLKLRFCRIRKLIGDVSMLLKLEEIDASSCSNLEEIPTNVREMPSLKVLNLTSQTNFQVSELPTSLKELTISSPVPNLLWLRNLEELQ FQDCDHELKIPGDIWKLSKLKTLRLWHINITNLLAPGTGSLPSSLKHLYIEHCQQLENLPDLSNLKYLMELRLLCPELREIPGLAELKSLVTLSVSDGRC LSHLEGLDNLLSLTYFTINGCAIKILPSLAGLKNLQALNIWQCPHLVEIQGLSESLQELGIADCPSLEIIPNLSRLVRLRYLALQHLQSLPNINGLESLE AVEYLEFRGCQSIKVLPSLSQLSKLKHIILKDNRCLSRIASLKGLKLEKVEVSGCLSLKSCPDLSGQENLKEVIIDGCLLLFDIQGLDTLGVSLKVLQVT NCTSIKKLPTLPNLGSLEILRLENCENLIEVKGLEALEFLKLLDMSGCKSIEKLPNLSNLGSCLKTLSLSNCERLIEVFGIEELRSLKVLYMSGCKSIEK LPNLSNLGSCLESLSLSNCDKLIDVAGIEELNSLEVLDMNGCMSIQKLPNLSNLRIRTLSLSNCEKLIEVPGPMEMMCLTVLEMNGCKSIEMLQLSKCCY LETLSLSGCEKLTSISGLEKMRYLRKLDISGCKLTHDLPEFRFAKVTRGKIFLSRVLSALDEELSKDCCLERCGTDAVKFARAVWS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36930			Disease resistance protein (TI...		Lus10001366 [exp]	0	1
AT1G56130			Leucine-rich repeat transmembr...		Lus10031199 [exp]	6.5	0.7842
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10041683 [exp]	14.1	0.7804
AT4G34390		XLG2	extra-large GTP-binding protei...		Lus10021013 [exp]	15.8	0.7298
AT5G12200		PYD2	pyrimidine 2 (.1)		Lus10036064 [exp]	20.5	0.7534
AT4G00590			N-terminal nucleophile aminohy...		Lus10040935 [exp]	26.2	0.7366
AT1G29750		RKF1	receptor-like kinase in flower...		Lus10005418 [exp]	29.2	0.7837
AT2G46060			transmembrane protein-related ...		Lus10018827 [exp]	32.4	0.7481
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Lus10021012 [exp]	33.8	0.7813
AT2G23420		NAPRT2	nicotinate phosphoribosyltrans...		Lus10019337 [exp]	37.7	0.7235
AT1G49710		ATFUT12, FUCTB,...	fucosyltransferase 12 (.1)		Lus10014060 [exp]	47.2	0.7484

Compare expression of checked genes

Lus10001366 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.