Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38250 518 / 0 Transmembrane amino acid transporter family protein (.1) AT2G42005 509 / 1e-180 Transmembrane amino acid transporter family protein (.1) AT5G65990 456 / 5e-159 Transmembrane amino acid transporter family protein (.1) AT3G11900 200 / 2e-59 ANT1 aromatic and neutral transporter 1 (.1) AT5G15240 69 / 2e-12 Transmembrane amino acid transporter family protein (.1.2) AT2G39130 60 / 2e-09 Transmembrane amino acid transporter family protein (.1) AT3G54830 58 / 9e-09 Transmembrane amino acid transporter family protein (.1) AT5G02170 56 / 5e-08 Transmembrane amino acid transporter family protein (.1.2) AT5G02180 49 / 5e-06 Transmembrane amino acid transporter family protein (.1) AT1G61270 48 / 9e-06 Transmembrane amino acid transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022995 [exp] 771 / 0 AT2G42005 580 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10026549 [exp] 575 / 0 AT2G42005 548 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10021089 [exp] 204 / 6e-61 AT3G11900 501 / 2e-176 aromatic and neutral transporter 1 (.1) Lus10017224 [exp] 204 / 7e-61 AT3G11900 502 / 3e-177 aromatic and neutral transporter 1 (.1) Lus10013835 [exp] 170 / 2e-51 AT2G42005 178 / 2e-55 Transmembrane amino acid transporter family protein (.1) Lus10005099 [exp] 65 / 5e-11 AT3G30390 646 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10034353 [exp] 64 / 9e-11 AT3G30390 655 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10031964 [exp] 59 / 4e-09 AT3G30390 689 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10035140 [exp] 58 / 8e-09 AT3G30390 691 / 0.0 Transmembrane amino acid transporter family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G206800 [exp] 577 / 0 AT2G42005 592 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.009G167900 [exp] 573 / 0 AT4G38250 583 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.005G102300 [exp] 510 / 1e-180 AT4G38250 539 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.016G064500 [exp] 213 / 2e-64 AT3G11900 521 / 0.0 aromatic and neutral transporter 1 (.1) Potri.017G106300 [exp] 55 / 5e-08 AT3G30390 625 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Potri.010G226000 [exp] 54 / 2e-07 AT2G39130 708 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.010G169000 [exp] 51 / 7e-07 AT3G28960 381 / 2e-130 Transmembrane amino acid transporter family protein (.1) Potri.002G114300 [exp] 50 / 2e-06 AT3G30390 516 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Potri.008G086500 [exp] 49 / 3e-06 AT3G28960 411 / 4e-142 Transmembrane amino acid transporter family protein (.1) Potri.004G111400 [exp] 49 / 4e-06 AT3G30390 643 / 0.0 Transmembrane amino acid transporter family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10001390 pacid=23169897 polypeptide=Lus10001390 locus=Lus10001390.g ID=Lus10001390.BGIv1.0 annot-version=v1.0 ATGGTGTTCGAGAAGAACAGGGGGACCTCGTCCTCGAACGGCCTCAAACCCACGGAGAACACGCCTCTAATCGGGGAGCCAAAGCACCTATCTTCTCAAT CGAAGACCATCGCCAATATCTTCATCGCAATCGTAGGCGCAGGGGTTCTAGGGCTACCCTACTCCTTCAAGCGGACGGGATGGATCATGAGCCTGATGAT GCTCTTCTCCGTCTCCGCCCTCACCTACTACTGTATGATGCTACTCGTCCACACCCGCCGCAAGCTACGCTTAATCGCCGGCGATTTCTCCATCATCAAC TCCTTCGGCGACTTGGGTTTCGCGGTATGTGGCTCTGTCGGCAGGATTGTTGTTGATGTCATGATTGTGCTGGCTCAAGCTGGCTTCTGTGTAGGGTACT TGATCTTTATCGCTACTACTTTGGATAACCTGGTCGATTCGTACAACGCCTTACCGCCCACTTCGCCCACCTTATTATCCGCCCAATTCTTAGGGATTTC GGCCAAGAGTTTGTTCGTATGGGCTTGTTTTCCTTTCCAATTAGGACTCAACTCCATTGCAAGTCTCACCCATTTAGCCCCGTTGAGCATCTTTGCTGAT GTGGTTGACCTGGCTGCAATGGGGGTTGTGATTGTGGAGGATTTGATGCTTATGGCGAAGAATATCCCTGATGTCAAGACATTTGGGGATCTATCCGTGT TCTTCTACGGGATGGGCGTGGCTGTTTATGCATTTGAAGGGATTGGCATGGTTTTGCCCCTGGAATCAGAAGCTAAAGATAAAGACAAGTTTGGGATGAA CTTAGGCCTTGCAGTGGCGGTTATCTCGCTCATCTATGGAGCATTTGGTGCACTTGGTTACCTTGCATTCGGCAACGAGACTAAAGATATCATCACTGCC AATCTCGGTGTGGGATGGATCAGCACCCTAGTTCAGCTTGGCTTATGCATAAACCTATTCTTCACATTCCCACTGATGATGAACCCGGTTTATGAAATCG TGGAGCGAAGGTTTTGGAACGGAAGGTACTGCCTGTGGCTGAGGTGGTTGCTGGTGTTGATCGTAAGCTTGGTTGCATTGTTGATCCCGAATTTCACCGA CTTCTTGTCCCTGGTGGGAAGCAGTGTGTGCTGTGGGTTGGGATTCGTTCTGCCGGCATTGTTTCACTTGCTTGTTTTCAAGGATGAAATGGGGTGGAAG GGCTGGACCATCGATGTCGGGATCGTGGCGTTAGGTGTCGTTCTCGGAGTCTCGGGGACTTGGTACTCTCTCCTTGAGATTTTCTCCGTCAAGGTTTAG
AA sequence Show only first row Show all	>Lus10001390 pacid=23169897 polypeptide=Lus10001390 locus=Lus10001390.g ID=Lus10001390.BGIv1.0 annot-version=v1.0 MVFEKNRGTSSSNGLKPTENTPLIGEPKHLSSQSKTIANIFIAIVGAGVLGLPYSFKRTGWIMSLMMLFSVSALTYYCMMLLVHTRRKLRLIAGDFSIIN SFGDLGFAVCGSVGRIVVDVMIVLAQAGFCVGYLIFIATTLDNLVDSYNALPPTSPTLLSAQFLGISAKSLFVWACFPFQLGLNSIASLTHLAPLSIFAD VVDLAAMGVVIVEDLMLMAKNIPDVKTFGDLSVFFYGMGVAVYAFEGIGMVLPLESEAKDKDKFGMNLGLAVAVISLIYGAFGALGYLAFGNETKDIITA NLGVGWISTLVQLGLCINLFFTFPLMMNPVYEIVERRFWNGRYCLWLRWLLVLIVSLVALLIPNFTDFLSLVGSSVCCGLGFVLPALFHLLVFKDEMGWK GWTIDVGIVALGVVLGVSGTWYSLLEIFSVKV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42005			Transmembrane amino acid trans...		Lus10001390 [exp]	0	1
AT2G42005			Transmembrane amino acid trans...		Lus10022995 [exp]	1.0	0.9658
AT1G60490		PI3K, ATVPS34	PHOSPATIDYLINOSITOL 3-KINASE, ...		Lus10030605 [exp]	3.0	0.9033
AT2G20370		AtMUR3, MUR3, K...	MURUS 3, KATAMARI 1, Exostosin...		Lus10024961 [exp]	3.5	0.8878
AT2G45260			Plant protein of unknown funct...		Lus10030291 [exp]	3.9	0.8888
AT5G19630			alpha/beta-Hydrolases superfam...		Lus10031220 [exp]	5.3	0.8956
AT2G18840			Integral membrane Yip1 family ...		Lus10025478 [exp]	5.3	0.9083
AT3G62720		ATXT1, XXT1	XYG XYLOSYLTRANSFERASE 1, xylo...		Lus10037514 [exp]	6.7	0.8820
AT1G29260		PEX7, ATPEX7	ARABIDOPSIS PEROXIN 7, peroxin...		Lus10029221 [exp]	8.1	0.8770
AT4G05460			RNI-like superfamily protein (...		Lus10038528 [exp]	8.2	0.8119
AT2G37110			PLAC8 family protein (.1)		Lus10026492 [exp]	8.8	0.8873

Compare expression of checked genes

Lus10001390 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.