Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53230 777 / 0 ATPase, AAA-type, CDC48 protein (.1) AT5G03340 773 / 0 ATPase, AAA-type, CDC48 protein (.1) AT3G09840 762 / 0 ATCDC48, CDC48A, CDC48 cell division cycle 48 (.1) AT3G01610 343 / 7e-109 CDC48C, EMB1354 embryo defective 1354, cell division cycle 48C (.1) AT2G03670 327 / 1e-104 CDC48B cell division cycle 48B (.1) AT1G03000 226 / 2e-64 PEX6 peroxin 6 (.1) AT5G08470 206 / 5e-57 EMB2817, PEX1 EMBRYO DEFECTIVE 2817, peroxisome 1 (.1) AT3G56690 196 / 8e-54 CIP111 Cam interacting protein 111 (.1) AT1G05910 191 / 9e-52 cell division cycle protein 48-related / CDC48-related (.1) AT1G45000 179 / 7e-51 AAA-type ATPase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021441 [exp] 774 / 0 AT5G03340 1529 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10021442 [exp] 774 / 0 AT5G03340 1520 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10016123 [exp] 772 / 0 AT5G03340 1526 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10037385 [exp] 769 / 0 AT5G03340 1501 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10016124 [exp] 764 / 0 AT5G03340 1511 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10023018 [exp] 676 / 0 AT5G03340 1419 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10018033 [exp] 350 / 3e-113 AT2G03670 813 / 0.0 cell division cycle 48B (.1) Lus10039722 [exp] 344 / 5e-109 AT3G01610 754 / 0.0 embryo defective 1354, cell division cycle 48C (.1) Lus10002639 [exp] 354 / 7e-109 AT3G56690 1001 / 0.0 Cam interacting protein 111 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G088200 [exp] 776 / 0 AT5G03340 1459 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.016G091600 [exp] 776 / 0 AT3G53230 1484 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.006G125500 [exp] 776 / 0 AT5G03340 1496 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.015G080600 [exp] 773 / 0 AT5G03340 1455 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.017G108200 [exp] 732 / 0 AT5G03340 1311 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.013G151600 [exp] 368 / 4e-118 AT3G01610 747 / 0.0 embryo defective 1354, cell division cycle 48C (.1) Potri.001G128700 [exp] 337 / 2e-108 AT2G03670 766 / 0.0 cell division cycle 48B (.1) Potri.014G133000 [exp] 225 / 5e-64 AT1G03000 1165 / 0.0 peroxin 6 (.1) Potri.001G174100 [exp] 213 / 3e-59 AT5G08470 1259 / 0.0 EMBRYO DEFECTIVE 2817, peroxisome 1 (.1) Potri.007G127900 [exp] 197 / 9e-54 AT1G05910 1351 / 0.0 cell division cycle protein 48-related / CDC48-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0332 [flax] [poplar] AcetylDC-like PF02359 [flax] [poplar] CDC48_N Cell division protein 48 (CDC48), N-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10001402 pacid=23169886 polypeptide=Lus10001402 locus=Lus10001402.g ID=Lus10001402.BGIv1.0 annot-version=v1.0 ATGTCAAACCAAGCTGAATCCTCCGATTCGGAACCAAGCGGGACTTTAGTACCGCCATTTTGGAGCGCAAGAAGGCTGCCAATCGCCTTGGAAGCTGTCA ACGATGACAACTCTGTCGTCGCTCTCCATCCCGATACCATGGAGAAGCTTCAGCTTTTCCGCGGTGATACCATACTGATCAAGGGAAAGAAAAGGAAAGA TACCATCTGCATTGCCCTTGCTGATGAGACCTATGATGAGCCAAAGATTAGGATGAACAAGGTTGTGAGGTCGAACCTTAGGGTTAGACTTGGGGATGTC GTCTCTGTTCATCAATGCCCTGATGTCAAGTACGGAAAACGTGTTCACATTCTACCCATTGATGACACAATTGAAGGGGGTATTCTGTTGTATGGACCTC CTGGTTCTGGCAAGACTCTCATTGCCAGAGCCGTGGCCAATGAAACTGGTGCTTTCTTCTTCTGTATTAATGGACCTGAGATCATGTCGAAATTGGCTGG TGAGAGTGAAAGCAACCTACGGAAAGCTTTTGAGGAGGCAGAGAAAAATGCCCCCTCTATTATCTTCATCGACGAGATTGATTCAATCGCTCCGAAACGG GAGAAGACACATGGTGAAGTTGAGAGAAGGATTGTCTCCCAACTGCTGACATTGATGGATGGACTGAAATCTCGTGCACATGTTATTGTCATGGGAGCTA CAAACCGTCCCAATAGCATTGACCCTGCTCTTAGGAGATTTGGAAGATTTGACAGGGAGATTGATATTGGCGTCCCAGATGAAGTTGGTCGTTTGGAGGT TCTCCGTATTCATACTAAGAACATGAAACTTGCTGAAGATGTTGATCCCGAAAGGATCTCTAAGGACACGCATGGCTATGTAGGTGTTGACTTGGCTGCT CTCTGTACTGAAGCTGCCCTTCAGTGCATTAGGGAGAAGATGGATGTGATTGACTTGGAAGATGAGACTATAGATGCTGAAATACTTAATTCCATGGCAG TTTCCAATGAGCACTTCCAAACTGCCCTTGGAACGAGCAACCCATCTGCTCTGCGTGGTGGAAGTTCCGAATGTAGCTGGGAAGATATTGGTGGCCTTGA GAACGTTAAGAGGGAACTTCAAGAGACTGTTCAATATCCGGTGGAACACCCAGAAAAATTCGAGAAGTTTGGGATGTCACCATCAAAGGGTGTACTTTTC TATGGACCTCCTGGTTGCGGAAAAACTCTCCTGGCCAAAGCTATTGCCAATGAATGCCAGGCAAACTTCATCAGTGTGAAGGGTCCCGAGTTGCTTCCAA TGTGGTTTGGTGAGAGTGAGGCCAATGTCAGAGAGATCTTTGATAAGGCTCGTGGTTCTGCTCCTTGTGTGCTCTTCTTCGATGAACTCGACTCCATTGC TGCCCAGAGAGGAAGCAGTGTTGGAGATGCTGCTGGTGCTGCAGATGGGGTGTTGAACCAGCTTTTGACAGAGATGGATGGCATGTCCGCCAAGAAGACT GTTTTCATCATCGGGGCAACAAATAGACCCGATATCGTAGACCCTGCATTGTTGCGTCCTGGTTGTCTCGATCAACTGATATACATTCCCCTGCCTGACG AGGAGTCTCGTCTTCAAATCTTCAAGGCATGCTTTTGA
AA sequence Show only first row Show all	>Lus10001402 pacid=23169886 polypeptide=Lus10001402 locus=Lus10001402.g ID=Lus10001402.BGIv1.0 annot-version=v1.0 MSNQAESSDSEPSGTLVPPFWSARRLPIALEAVNDDNSVVALHPDTMEKLQLFRGDTILIKGKKRKDTICIALADETYDEPKIRMNKVVRSNLRVRLGDV VSVHQCPDVKYGKRVHILPIDDTIEGGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKR EKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEDVDPERISKDTHGYVGVDLAA LCTEAALQCIREKMDVIDLEDETIDAEILNSMAVSNEHFQTALGTSNPSALRGGSSECSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLF YGPPGCGKTLLAKAIANECQANFISVKGPELLPMWFGESEANVREIFDKARGSAPCVLFFDELDSIAAQRGSSVGDAAGAADGVLNQLLTEMDGMSAKKT VFIIGATNRPDIVDPALLRPGCLDQLIYIPLPDEESRLQIFKACF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53230			ATPase, AAA-type, CDC48 protei...		Lus10001402 [exp]	0	1
AT5G03340			ATPase, AAA-type, CDC48 protei...		Lus10023018 [exp]	14.2	0.6856
AT5G06700		TBR	TRICHOME BIREFRINGENCE, Plant ...		Lus10033616 [exp]	20.8	0.5350
AT1G55310		ATSCL33, SR33, ...	SC35-like splicing factor 33 (...		Lus10029328 [exp]	22.7	0.5866
AT5G40400			Pentatricopeptide repeat (PPR)...		Lus10013077 [exp]	39.1	0.5520
AT5G46090			Protein of unknown function (D...		Lus10017689 [exp]	43.2	0.5134
AT4G08330			unknown protein		Lus10018170 [exp]	73.0	0.5217
AT1G15780			unknown protein		Lus10025451 [exp]	107.0	0.4932
AT1G18520		TET11	tetraspanin11 (.1)		Lus10009607 [exp]	166.4	0.4472
AT4G30720		PDE327	PIGMENT DEFECTIVE 327, FAD/NAD...		Lus10010776 [exp]	183.9	0.4343

Compare expression of checked genes

Lus10001402 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.