Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30950 1048 / 0 FTSH2, VAR2 VARIEGATED 2, FtsH extracellular protease family (.1) AT1G06430 1040 / 0 FTSH8 FTSH protease 8 (.1) AT5G15250 818 / 0 FTSH6, ATFTSH6 FTSH protease 6 (.1.2) AT1G50250 489 / 9e-163 FTSH1 FTSH protease 1 (.1) AT5G42270 486 / 9e-162 FTSH5, VAR1 VARIEGATED 1, FtsH extracellular protease family (.1) AT5G53170 386 / 5e-122 FTSH11 FTSH protease 11 (.1) AT2G26140 377 / 7e-120 FTSH4 FTSH protease 4 (.1) AT2G29080 369 / 2e-115 FTSH3 FTSH protease 3 (.1) AT1G07510 367 / 1e-114 FTSH10 FTSH protease 10 (.1) AT5G58870 349 / 4e-108 FTSH9 FTSH protease 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001054 [exp] 1201 / 0 AT2G30950 1154 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Lus10012277 [exp] 473 / 7e-160 AT1G50250 935 / 0.0 FTSH protease 1 (.1) Lus10016003 [exp] 479 / 7e-159 AT5G42270 1129 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10021824 [exp] 478 / 2e-158 AT5G42270 934 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10034572 [exp] 381 / 9e-123 AT5G42270 791 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10014930 [exp] 380 / 4e-120 AT5G53170 1077 / 0.0 FTSH protease 11 (.1) Lus10039334 [exp] 375 / 4e-118 AT5G53170 1087 / 0.0 FTSH protease 11 (.1) Lus10038819 [exp] 372 / 3e-117 AT5G53170 1064 / 0.0 FTSH protease 11 (.1) Lus10001060 [exp] 373 / 5e-117 AT5G53170 1090 / 0.0 FTSH protease 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G139500 [exp] 1087 / 0 AT2G30950 1057 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Potri.002G215100 [exp] 1069 / 0 AT2G30950 1040 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Potri.017G084000 [exp] 831 / 0 AT5G15250 959 / 0.0 FTSH protease 6 (.1.2) Potri.002G012000 [exp] 497 / 6e-166 AT5G42270 1094 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.005G249200 [exp] 496 / 8e-166 AT5G42270 1077 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.002G220366 [exp] 417 / 3e-141 AT1G06430 405 / 1e-138 FTSH protease 8 (.1) Potri.006G227700 [exp] 383 / 6e-122 AT2G26140 1066 / 0.0 FTSH protease 4 (.1) Potri.015G020700 [exp] 380 / 4e-120 AT5G53170 1096 / 0.0 FTSH protease 11 (.1) Potri.012G000700 [exp] 374 / 1e-117 AT5G53170 1076 / 0.0 FTSH protease 11 (.1) Potri.009G033600 [exp] 365 / 7e-114 AT1G07510 1114 / 0.0 FTSH protease 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF01434 [flax] [poplar] Peptidase_M41 Peptidase family M41 CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10001420 pacid=23145935 polypeptide=Lus10001420 locus=Lus10001420.g ID=Lus10001420.BGIv1.0 annot-version=v1.0 ATGAGCACGCCAAGGGGGCTAAACATCGAAATATCCAAGAAGAAAAGAGAGAGCTCCCTAACCGCTGAGAATAAGCCACGCCTTCCCCTTTCTCCTCAAC CACATCTCCTCTCCTTTAACCAGCTTGACACCGCTTCCCAGCCTCCTTCAAATTTCCTCACCCTTCTTCCCTCCATTGCAAACCGCACTTCAAGCTTGCT ACCACCCTACTCTCTTCCTGGCCTTTGCTTCCAAGTTTGGCGATATGCCAAGAGGGAGCTTGAAAATGACTGTATATTTGTATTTCCTGGACAGCATGCT GCTTCTATAGTTCTAGTACTGCTTGCTGTGTGTTACTCTATGTCAGCCTCATCAGCTTGTCTTCTAGGGAGCGGTTTATCAAGCACCAAACCATACCTGT GCAATTGTTCAACTCTTCCTTCATTGGGTAAGAGATCAAAAGCATTTTTTATAAAGGCCTCTTTGGATAAGAAGCAGTTTGATGGAAGAAGAGACTTCCT GAAGTTGATGTTGGGAAATGCTGGACTTGGAGCTTCCACTTTACTTGGAAATGGGAAAGCCCTTGCTGATGAGCAAGGGGTTTCTTCTTCCAGGATGTCT TATTCGAGGTTCTTGGAATATTTGGACAAGGACAGAGTGACCAAGGTGGACTTGTTCGAGAATGGAACAATTGCAATTGTTGAAGCTGTTTCTCCTGAGC TGGGTAATAGGGTGCAACGGGTACGAGTGCAGCTTCCAGGCCTTAGCCAAGAGCTTCTTCAGAAGTTTAGGGAAAAGAACATTGACTTTGCAGCACATAA TGCTCAAGAAGACTCAGGTTCTCTCCTGTTTAACTTGATAGGGAACCTGGCTTTCCCACTACTCTTAATCGGTGGCCTGTTCTTTCTCTCTCGACGTTCC CCCGGGGGAATGGGCGGTCCTGGAGGCCCGGGCAACCCCCTTGCCTTTGGTCAATCTAAGGCGAAGTTCCAAATGGAGCCGAACACTGGCGTGACATTCA ATGATGTTGCCGGAGTTGATGAAGCAAAGCAAGATTTCATGGAAGTTGTAGAGTTCCTTAAGAAGCCTGAGAGATTTACTTCCGTTGGAGCTCGCATTCC GAAAGGTGTTCTTCTTATTGGTCCACCGGGGACTGGGAAGACCCTTCTGGCTAAAGCCATTGCTGGTGAGGCTGGCGTTCCATTCTTTTCAATATCTGGC TCCGAATTTGTCGAGATGTTTGTTGGTGTCGGTGCTTCTCGAGTACGCGACCTCTTCAAAAAGGCAAAAGAGAACGCTCCATGCATAGTGTTTGTTGATG AAATTGATGCGGTTGGAAGGCAAAGAGGAGCTGGCATTGGCGGAGGAAATGACGAGAGAGAGCAGACCCTGAACCAGCTTTTAACTGAGATGGACGGTTT CGAGGGTAACACTGGCGTCATTGTGGTTGCAGCAACTAACAGAGCAGACATCCTTGACTCGGCTTTGTTGAGGCCAGGGCGATTTGACCGACAAGTGAGT GTCGATGTTCCAGATATCCGTGGTAGGACAGATATCCTGAAAGTACACTCGAGTAACAAGAAATTTGATGCAGATGTGTCACTTGAGGTCATAGCCATGA GAACACCAGGCTTCAGTGGAGCTGATCTTGCTAACCTCTTAAACGAGGCAGCCATATTAGCTGGTCGACGTGGGAAAACAGCCATTTCGCCTAAAGAGAT TGATGACTCTATTGATAGGATCGTTGCTGGGATGGAGGGAACCGTAATGACCGATGGAAAGAGTAAAAGTCTGGTGGCGTACCATGAAGTTGGTCATGCC ATTTGTGGGACTTTGACTCCTGGACATGATCCAGTTCAAAAGGTCACTCTAATTCCCCGTGGTCAGGCACGAGGTCTTACTTGGTTCATTCCAAATGATG ACCCTTCCCTGATCTCCAAGCAGCAACTTTTTGCGAGAATCGTTGGGGGACTAGGTGGGAGAGCTGCTGAAGAAATTATCTTCGGTGAACCTGAGGTAAC CACTGGGGCAGCTAGTGACCTTCAACAGATCACTGGTTTAGCAAAGCAGATGGTTGTCACATTTGGAATGTCTGAAATCGGACCATGGTCACTGATGGAC TCGTCAGCACAAAGCGCAGATGTATTCATGAGAATGATGGCAAGAAACTCCATGTCAGAAAAGCTTGCGGAGGATATAGACACTGCCGTGAAGAAATTGT CAGATGGTGCGTACCAGATTGCACTGAGCCAGATAAGGAACAACCGCGAGGCAATCGACAAGATCGTAGAAGTCCTTTTGGAGAAAGAAACAATGTCGGG CGACGAGTTCAGGGCAATCCTTTCGGAGTTCATCGAAATTCCTGTTGAGAATCGGGTTCCTCCTGCGGTGCCAACTCCGGTAACTGCTTAG
AA sequence Show only first row Show all	>Lus10001420 pacid=23145935 polypeptide=Lus10001420 locus=Lus10001420.g ID=Lus10001420.BGIv1.0 annot-version=v1.0 MSTPRGLNIEISKKKRESSLTAENKPRLPLSPQPHLLSFNQLDTASQPPSNFLTLLPSIANRTSSLLPPYSLPGLCFQVWRYAKRELENDCIFVFPGQHA ASIVLVLLAVCYSMSASSACLLGSGLSSTKPYLCNCSTLPSLGKRSKAFFIKASLDKKQFDGRRDFLKLMLGNAGLGASTLLGNGKALADEQGVSSSRMS YSRFLEYLDKDRVTKVDLFENGTIAIVEAVSPELGNRVQRVRVQLPGLSQELLQKFREKNIDFAAHNAQEDSGSLLFNLIGNLAFPLLLIGGLFFLSRRS PGGMGGPGGPGNPLAFGQSKAKFQMEPNTGVTFNDVAGVDEAKQDFMEVVEFLKKPERFTSVGARIPKGVLLIGPPGTGKTLLAKAIAGEAGVPFFSISG SEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFEGNTGVIVVAATNRADILDSALLRPGRFDRQVS VDVPDIRGRTDILKVHSSNKKFDADVSLEVIAMRTPGFSGADLANLLNEAAILAGRRGKTAISPKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHA ICGTLTPGHDPVQKVTLIPRGQARGLTWFIPNDDPSLISKQQLFARIVGGLGGRAAEEIIFGEPEVTTGAASDLQQITGLAKQMVVTFGMSEIGPWSLMD SSAQSADVFMRMMARNSMSEKLAEDIDTAVKKLSDGAYQIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFIEIPVENRVPPAVPTPVTA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30950		FTSH2, VAR2	VARIEGATED 2, FtsH extracellul...		Lus10001420 [exp]	0	1
AT2G30950		FTSH2, VAR2	VARIEGATED 2, FtsH extracellul...		Lus10001054 [exp]	1.0	0.9962
AT2G41040			S-adenosyl-L-methionine-depend...		Lus10008815 [exp]	2.4	0.9545
AT5G42270		FTSH5, VAR1	VARIEGATED 1, FtsH extracellul...		Lus10021824 [exp]	2.4	0.9756
AT5G42270		FTSH5, VAR1	VARIEGATED 1, FtsH extracellul...		Lus10034572 [exp]	3.0	0.9709
AT1G02800		ATCEL2	cellulase 2 (.1)		Lus10017338 [exp]	3.5	0.9599
AT4G02920			unknown protein		Lus10029640 [exp]	3.9	0.9575
AT1G33110			MATE efflux family protein (.1...		Lus10020307 [exp]	4.2	0.9322
AT1G44575		CP22, PSBS, NPQ...	PHOTOSYSTEM II SUBUNIT S, NONP...		Lus10042720 [exp]	5.3	0.9538
AT1G06690			NAD(P)-linked oxidoreductase s...		Lus10002744 [exp]	6.6	0.9417
AT2G42130			Plastid-lipid associated prote...		Lus10021055 [exp]	9.2	0.9345

Compare expression of checked genes

Lus10001420 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.