Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05530 328 / 3e-114 SDRA, IBR1 SHORT-CHAIN DEHYDROGENASE/REDUCTASE A, indole-3-butyric acid response 1 (.1) AT2G29150 99 / 2e-24 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G06060 94 / 7e-23 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29360 92 / 4e-22 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29290 90 / 4e-21 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT3G05260 86 / 2e-19 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G07440 85 / 2e-19 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G29340 83 / 1e-18 NAD-dependent epimerase/dehydratase family protein (.1.2.3) AT2G29330 82 / 2e-18 TRI tropinone reductase (.1) AT2G30670 81 / 5e-18 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020019 [exp] 388 / 8e-138 AT4G05530 395 / 5e-141 SHORT-CHAIN DEHYDROGENASE/REDUCTASE A, indole-3-butyric acid response 1 (.1) Lus10015542 [exp] 374 / 4e-132 AT4G05530 385 / 2e-136 SHORT-CHAIN DEHYDROGENASE/REDUCTASE A, indole-3-butyric acid response 1 (.1) Lus10001636 [exp] 217 / 3e-72 AT4G05530 174 / 9e-56 SHORT-CHAIN DEHYDROGENASE/REDUCTASE A, indole-3-butyric acid response 1 (.1) Lus10040735 [exp] 110 / 7e-29 AT5G06060 341 / 4e-119 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016499 [exp] 108 / 7e-28 AT5G06060 337 / 2e-117 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040731 [exp] 103 / 2e-26 AT5G06060 308 / 5e-106 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040271 [exp] 102 / 1e-25 AT5G06060 388 / 2e-137 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040733 [exp] 99 / 2e-24 AT5G06060 346 / 5e-121 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016498 [exp] 98 / 4e-24 AT5G06060 351 / 7e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G022500 [exp] 350 / 5e-123 AT4G05530 373 / 5e-132 SHORT-CHAIN DEHYDROGENASE/REDUCTASE A, indole-3-butyric acid response 1 (.1) Potri.011G022400 [exp] 339 / 2e-118 AT4G05530 330 / 4e-115 SHORT-CHAIN DEHYDROGENASE/REDUCTASE A, indole-3-butyric acid response 1 (.1) Potri.006G089800 [exp] 93 / 3e-22 AT2G29150 307 / 2e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206900 [exp] 92 / 9e-22 AT2G47140 229 / 3e-75 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G026000 [exp] 88 / 2e-20 AT2G29290 362 / 2e-127 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.010G142600 [exp] 88 / 2e-20 AT2G29290 354 / 3e-124 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.005G039300 [exp] 85 / 2e-19 AT2G29150 356 / 7e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G025400 [exp] 85 / 5e-19 AT3G12800 427 / 3e-152 short-chain dehydrogenase-reductase B (.1) Potri.014G135510 [exp] 84 / 6e-19 AT4G03140 400 / 8e-141 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G074000 [exp] 82 / 4e-18 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10001430 pacid=23170708 polypeptide=Lus10001430 locus=Lus10001430.g ID=Lus10001430.BGIv1.0 annot-version=v1.0 ATGACGAGTAATAAGATTAACAATGGAAGAAGATTTGTGGGGAAGGTGGCGATTGTCACAGCTTCGACTCAAGGTATCGGATTCTCCATCGCTCGTCGTC TTGGCTTGGAAGGCGCCTCTGTTGTCATCTCCTCCCGCAAACAGCTTAACGTGGACGAGGCGGTTAAGAAGCTGAGAGAAGAGGGAATCCAAGAAGTGTT GGGGGTTGTTTGCCATGTCTCTAATTCACAACATAGGAAGACTCTCATTGACAAAACTGTTGAGAAATATGGCAAAATAGACGTGCTCGTATCGAATGCA GCTGCGAACCCATCGCCGGAATCCCTCTTGGACGCGGAGGAATCCGTCCTCGACAAGCTGTGGGAAGTAAACGTCAAAGCTTCCATCCTGCTGTTGAAGG ATGGAGCTCCATACATGAAAAGGGGTTCTTGCGTTGTTCTGGTTGCATCCGTTGCTGGCTACGACCCGCCTGCTTCGGCGGCTATGTACGGTGTCACGAA AACCGCCCTTCTCGGCCTCACCAAGGCACTTGCGAGTCAGATGGCGCCTGATGTTCGAGTCAACTGTCTCGCTCCTGGCTTCGTCCCTACGCATTTTGCT TCTTTCATTACCGAAAATGAACAAATGAGGAAGTCCATGGAGGAGAAGACGTTGCTCAACCGGTTGGGAACAACAGAAGACATGGCGGCCGCAGCGGCGT TTCTGGCATCAGGCGATGCTTCCTACATAACTGGTGAAACTCTAGTGGTAGCTGGTGGAATGCCATCTCGCCTTTGA
AA sequence Show only first row Show all	>Lus10001430 pacid=23170708 polypeptide=Lus10001430 locus=Lus10001430.g ID=Lus10001430.BGIv1.0 annot-version=v1.0 MTSNKINNGRRFVGKVAIVTASTQGIGFSIARRLGLEGASVVISSRKQLNVDEAVKKLREEGIQEVLGVVCHVSNSQHRKTLIDKTVEKYGKIDVLVSNA AANPSPESLLDAEESVLDKLWEVNVKASILLLKDGAPYMKRGSCVVLVASVAGYDPPASAAMYGVTKTALLGLTKALASQMAPDVRVNCLAPGFVPTHFA SFITENEQMRKSMEEKTLLNRLGTTEDMAAAAAFLASGDASYITGETLVVAGGMPSRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G05530		SDRA, IBR1	SHORT-CHAIN DEHYDROGENASE/REDU...		Lus10001430 [exp]	0	1
AT2G29940		ABCG31, PDR3, A...	ATP-binding cassette G31, plei...		Lus10040676 [exp]	3.3	0.9394
AT5G66310			ATP binding microtubule motor ...		Lus10014268 [exp]	5.5	0.9336
AT4G16970			Protein kinase superfamily pro...		Lus10040153 [exp]	5.7	0.9204
AT4G26140		BGAL12	beta-galactosidase 12 (.1.2)		Lus10008974 [exp]	7.1	0.9270
AT3G54100			O-fucosyltransferase family pr...		Lus10035540 [exp]	9.7	0.9161
AT3G10910			RING/U-box superfamily protein...		Lus10033425 [exp]	10.0	0.7642
AT3G27470			Protein of unknown function (D...		Lus10035228 [exp]	10.5	0.8978
AT2G22620			Rhamnogalacturonate lyase fami...		Lus10004281 [exp]	10.7	0.9154
AT1G02400		ATGA2OX4, ATGA2...	DOWNSTREAM TARGET OF AGL15 1, ...		Lus10025016 [exp]	11.6	0.8978
AT3G54100			O-fucosyltransferase family pr...		Lus10027753 [exp]	12.1	0.9045

Compare expression of checked genes

Lus10001430 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.