Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17490 172 / 4e-48 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT3G03450 165 / 2e-45 GRAS RGL2 RGA-like 2 (.1) AT1G66350 162 / 1e-44 GRAS RGL1 RGA-like 1 (.1) AT2G01570 153 / 8e-41 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT1G14920 152 / 1e-40 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT1G55580 131 / 8e-34 GRAS SCL18, LAS SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) AT1G63100 132 / 4e-33 GRAS GRAS family transcription factor (.1) AT5G59450 125 / 4e-31 GRAS SCL11 GRAS family transcription factor (.1) AT3G46600 124 / 4e-31 GRAS GRAS family transcription factor (.1.2.3) AT2G29065 120 / 5e-29 GRAS family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002424 [exp] 818 / 0 AT5G17490 161 / 8e-43 RGA-like protein 3 (.1) Lus10000140 [exp] 547 / 0 AT5G17490 86 / 8e-18 RGA-like protein 3 (.1) Lus10016897 [exp] 311 / 2e-100 AT3G03450 189 / 5e-53 RGA-like 2 (.1) Lus10037758 [exp] 308 / 4e-99 AT3G03450 186 / 6e-52 RGA-like 2 (.1) Lus10016893 [exp] 301 / 2e-96 AT3G03450 175 / 1e-47 RGA-like 2 (.1) Lus10036459 [exp] 287 / 2e-91 AT3G03450 171 / 1e-46 RGA-like 2 (.1) Lus10016891 [exp] 281 / 3e-90 AT3G03450 152 / 2e-40 RGA-like 2 (.1) Lus10037756 [exp] 280 / 8e-90 AT1G50420 156 / 5e-42 scarecrow-like 3 (.1) Lus10037753 [exp] 271 / 1e-85 AT1G66350 156 / 8e-42 RGA-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G195600 [exp] 510 / 2e-178 AT3G03450 209 / 2e-60 RGA-like 2 (.1) Potri.014G120000 [exp] 420 / 2e-143 AT3G03450 174 / 1e-47 RGA-like 2 (.1) Potri.010G143700 [exp] 372 / 6e-124 AT1G66350 182 / 2e-50 RGA-like 1 (.1) Potri.010G143600 [exp] 335 / 6e-110 AT3G03450 205 / 7e-59 RGA-like 2 (.1) Potri.010G143500 [exp] 328 / 2e-107 AT3G03450 182 / 8e-51 RGA-like 2 (.1) Potri.010G143200 [exp] 300 / 6e-98 AT1G66350 198 / 8e-58 RGA-like 1 (.1) Potri.010G143400 [exp] 297 / 3e-96 AT1G66350 207 / 1e-60 RGA-like 1 (.1) Potri.008G131700 [exp] 160 / 2e-43 AT2G01570 781 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.001G326000 [exp] 159 / 2e-42 AT1G66350 296 / 2e-92 RGA-like 1 (.1) Potri.010G110700 [exp] 154 / 3e-41 AT2G01570 764 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10001451 pacid=23161029 polypeptide=Lus10001451 locus=Lus10001451.g ID=Lus10001451.BGIv1.0 annot-version=v1.0 ATGAGGGTAGCCGGAGAGAGGTACATACAATTTTCGGAGCATCATAGGTGTGACGATTTCTCCATACTCATGCACCCTTTCGGTTATGCCCTATCAGCGG GGCTATCAGAGGAAGAGACTAAGGATGTGGAGTTGGCCCACCTCCTCCTTGCTGCCGCAGAGAAGGTGGGGTTCCACCAATATGACCGCGCCAGCAAATT GCTGACACGGTGTGAGTGGATCGCGTCAGATAGGTCCAACGCAGCCCAGAGGATCGTGCATTGCTTCGCAGAAGCTCTCCGAGAGAGGATCGATAGAGGG TTGGGGAAATTCATTGTCAGGATGCCGGATCCCTTCCCGTCCTTCAATTCCATGTACAATAATGGATCAGGTACAAATCTGGCCTCCATTTGTCTACACC AAAAGGCGCCATTCAGTCAAGTGATGCAAATGACAACCGTACAATCCATCATTGAAAACATAGGAACATCAGCTAGAAAGCTTCATTGCATTGATCTGGA GATCAGGAGCGGAGTGATCTGGACAGCCTTGATGCAGGCTCTCGCGAACCGAGGTGCTGATTGCGTAATGGTCGAGCATCTCAGGGTCACGGCCATTGCC CGAATCTCGGAAAGATACCACGTGGAGGACACCGGGAGGCGGTTGGAGAGCTTTGCTAGGTCCATGAACTTCCCCTTCAGTTTCCACGTTGTATATATTA ACACATGCCTCAGCGATATCAGAGAGGATGTGTTTCGGGTGACTTTCGACGAAACTGTGGTTGTTGTGTGTACCTTCATCCTCCGGACCCTCCTCGGACG ACCAGAAAGATTAGAGCGTTTGATGAGGGTATTGAAGAACCTGAATCCAACCCTAATGGTGGTGGGGGAAACGGAAGCCAACCACAACTCGCCCGTATTT GTGAACCGGTTCATCGAGTCGTTGTTCTACTACAGCGCGTACTTCGACAGCCTGGAGACATGCATGCGCGAGGACGTCGAATACAGGACGGCAATCGAAG CCACTCTCTCCCACGGGCTACGAAACATGGTGGTGATGGAAGGCAACGAGAGGACCTCGAGGCACGTGAAGCTCGAGGTGTGGAGGACCTTCTTCTCCAC GAGGTTCAAGATGGTGGAGCTAGGGTTCAGCAAGACGTCGACGTACCAGGCTAGCTTGGTCATCAAGCAATTCCAAGAATGGAGCTCCTGTAGCATTGAA AAGGATGGCGAAGGACTGACTATTGGATGGAAAGGGACGCCTTTGTTCTCCCTTTCTGCTTGGAAGTTCTCCAGGGATAGGCTTGGGAGGTTCTTTAATT ACCGATTCTTTTAG
AA sequence Show only first row Show all	>Lus10001451 pacid=23161029 polypeptide=Lus10001451 locus=Lus10001451.g ID=Lus10001451.BGIv1.0 annot-version=v1.0 MRVAGERYIQFSEHHRCDDFSILMHPFGYALSAGLSEEETKDVELAHLLLAAAEKVGFHQYDRASKLLTRCEWIASDRSNAAQRIVHCFAEALRERIDRG LGKFIVRMPDPFPSFNSMYNNGSGTNLASICLHQKAPFSQVMQMTTVQSIIENIGTSARKLHCIDLEIRSGVIWTALMQALANRGADCVMVEHLRVTAIA RISERYHVEDTGRRLESFARSMNFPFSFHVVYINTCLSDIREDVFRVTFDETVVVVCTFILRTLLGRPERLERLMRVLKNLNPTLMVVGETEANHNSPVF VNRFIESLFYYSAYFDSLETCMREDVEYRTAIEATLSHGLRNMVVMEGNERTSRHVKLEVWRTFFSTRFKMVELGFSKTSTYQASLVIKQFQEWSSCSIE KDGEGLTIGWKGTPLFSLSAWKFSRDRLGRFFNYRFF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17490	GRAS	AtRGL3, RGL3	RGA-like protein 3 (.1)		Lus10001451 [exp]	0	1

Compare expression of checked genes

Lus10001451 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.