Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47460 209 / 6e-65 MYB PFG1, ATMYB12 PRODUCTION OF FLAVONOL GLYCOSIDES 1, myb domain protein 12 (.1) AT3G62610 206 / 4e-64 MYB PFG2, ATMYB11 PRODUCTION OF FLAVONOL GLYCOSIDES 2, myb domain protein 11 (.1) AT5G49330 194 / 1e-59 MYB PFG3, ATMYB111 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) AT4G28110 179 / 2e-54 MYB ATMYB41 myb domain protein 41 (.1) AT4G21440 180 / 5e-54 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT1G22640 176 / 9e-54 MYB AtMYB3 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) AT1G34670 178 / 3e-53 MYB ATMYB93 myb domain protein 93 (.1) AT3G02940 177 / 3e-53 MYB ATMYB107 myb domain protein 107 (.1) AT5G16770 177 / 3e-53 MYB ATMYB9 myb domain protein 9 (.1.2) AT5G15310 176 / 1e-52 MYB ATMYB16, ATMIXTA myb domain protein 16 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002435 [exp] 486 / 2e-174 AT2G47460 206 / 9e-64 PRODUCTION OF FLAVONOL GLYCOSIDES 1, myb domain protein 12 (.1) Lus10036336 [exp] 208 / 9e-65 AT2G47460 225 / 9e-71 PRODUCTION OF FLAVONOL GLYCOSIDES 1, myb domain protein 12 (.1) Lus10010273 [exp] 207 / 2e-64 AT2G47460 221 / 3e-69 PRODUCTION OF FLAVONOL GLYCOSIDES 1, myb domain protein 12 (.1) Lus10016855 [exp] 199 / 9e-62 AT5G49330 242 / 3e-78 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) Lus10036453 [exp] 192 / 5e-59 AT5G49330 237 / 1e-76 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) Lus10027459 [exp] 182 / 2e-55 AT3G61250 229 / 3e-74 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Lus10039214 [exp] 179 / 3e-54 AT3G61250 226 / 7e-73 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Lus10041142 [exp] 179 / 9e-54 AT1G34670 315 / 2e-106 myb domain protein 93 (.1) Lus10036472 [exp] 178 / 1e-53 AT5G10280 307 / 1e-103 myb domain protein 92 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G141000 [exp] 211 / 5e-66 AT5G49330 248 / 7e-80 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) Potri.002G198100 [exp] 209 / 8e-65 AT5G49330 225 / 2e-70 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) Potri.014G122700 [exp] 199 / 1e-60 AT5G49330 214 / 4e-66 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) Potri.004G033100 [exp] 182 / 2e-54 AT4G21440 293 / 4e-97 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.007G093900 [exp] 179 / 1e-53 AT1G34670 289 / 6e-96 myb domain protein 93 (.1) Potri.019G118200 [exp] 179 / 1e-53 AT4G05100 278 / 7e-92 myb domain protein 74 (.1) Potri.005G164900 [exp] 178 / 2e-53 AT1G34670 309 / 7e-104 myb domain protein 93 (.1) Potri.015G143500 [exp] 177 / 2e-53 AT3G61250 278 / 2e-93 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Potri.019G018200 [exp] 174 / 2e-53 AT2G31180 223 / 1e-73 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.013G148600 [exp] 177 / 7e-53 AT4G21440 269 / 4e-88 A. THALIANA MYB 4, MYB-like 102 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10001458 pacid=23161042 polypeptide=Lus10001458 locus=Lus10001458.g ID=Lus10001458.BGIv1.0 annot-version=v1.0 ATGGGGAGGAAGCCATGCTGCGACAAGGTGGGTTTGAAGAAGGGCAGATGGTCTGCAGAGGAAGACCAGCTTCTTGCCGATTACATCGTTGCCAATGGTG AAGGCTCCTGGAAATCATTGCCCCAAAATGCCGGACTGAAGAGGTGCGGGAAGAGTTGCAGACTAAGGTGGGTTAATTACCTGAAATCTGATATCAAGAG GGGCAACATCTCCACCGCCGAGGCCGAAACCATACTCAACTTGCATACTTGTCTGGGCAACAGATGGTCTACAATAGCTAGTCAATTGTCGGGGAGAACA GACAACGAGATCAAAAACTACTGGAATTCACATTTAAGCAGAAATACTCACAGCTTCATACGCCCAACTGCGACCCAACCAAGTTTGGCGACATTAGTAG CAGACGTGTCCAAGGTTGGGACCACGGTGGTAGCCAATACAAAACGAGGAAGAAAAACAAATAACTCATCATCATCAAAGCGTACCAAGAACGGCAAAAC CAACATATCAAAGGACACCGGTAAAAATGTTGTCAGCGAGCCATCAGTGGTAGAGAAAGCCGTCATTACAGTCAGCGAACCGGAGACAGGTCTAGCAACG ACCACAAAACATCCGTCACCAATAAGCTATATTAGCGAAGAAACTACTTGTAGCAGAGTGATGAAAGAGCAGAAATACAATGCCTCATTAAGCTGGGCAA CTGAAATCCCAGCTACTCCATGGGAAAAAGTCCTTCCTCTTGATGAGCAATGGGACATGGACAAAGATTGGGATGATGTCGTGAGCTACTGTACTAAGAC TTCGACCATGGATAGTACTGTCGACCCATTGATTGGTTGGTCGTGGGAATTGTACGCTGGTGATGGTGGCCTAGAAGCAGGAAGGCATAATGGAGTGTTG GAGTTTGATGACCATGACAATGATGACGACGACAAGCAAACTGCCTTCGTAAATTGGCTTCTTTCCTGA
AA sequence Show only first row Show all	>Lus10001458 pacid=23161042 polypeptide=Lus10001458 locus=Lus10001458.g ID=Lus10001458.BGIv1.0 annot-version=v1.0 MGRKPCCDKVGLKKGRWSAEEDQLLADYIVANGEGSWKSLPQNAGLKRCGKSCRLRWVNYLKSDIKRGNISTAEAETILNLHTCLGNRWSTIASQLSGRT DNEIKNYWNSHLSRNTHSFIRPTATQPSLATLVADVSKVGTTVVANTKRGRKTNNSSSSKRTKNGKTNISKDTGKNVVSEPSVVEKAVITVSEPETGLAT TTKHPSPISYISEETTCSRVMKEQKYNASLSWATEIPATPWEKVLPLDEQWDMDKDWDDVVSYCTKTSTMDSTVDPLIGWSWELYAGDGGLEAGRHNGVL EFDDHDNDDDDKQTAFVNWLLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47460	MYB	PFG1, ATMYB12	PRODUCTION OF FLAVONOL GLYCOSI...		Lus10001458 [exp]	0	1
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10016223 [exp]	1.7	0.9555
AT1G60790		TBL2	TRICHOME BIREFRINGENCE-LIKE 2,...		Lus10030590 [exp]	5.0	0.9365
AT4G25150			HAD superfamily, subfamily III...		Lus10006849 [exp]	5.3	0.9326
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10024685 [exp]	5.7	0.9392
AT1G14180			RING/U-box superfamily protein...		Lus10036764 [exp]	6.5	0.9504
AT5G08100		ASPGA1	asparaginase A1, N-terminal nu...		Lus10017879 [exp]	9.6	0.9392
AT2G47460	MYB	PFG1, ATMYB12	PRODUCTION OF FLAVONOL GLYCOSI...		Lus10002435 [exp]	10.4	0.9112
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10032347 [exp]	12.5	0.9330
AT2G28780			unknown protein		Lus10007010 [exp]	12.6	0.9044
AT5G37990			S-adenosyl-L-methionine-depend...		Lus10028500 [exp]	12.8	0.9080

Compare expression of checked genes

Lus10001458 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.