Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50700 377 / 1e-130 HSD1 hydroxysteroid dehydrogenase 1 (.1) AT5G50600 377 / 1e-130 ATHSD1 hydroxysteroid dehydrogenase 1 (.1) AT5G50770 292 / 2e-97 ATHSD6 hydroxysteroid dehydrogenase 6 (.1) AT3G47350 276 / 2e-91 ATHSD2 hydroxysteroid dehydrogenase 2 (.1.2) AT5G50690 256 / 5e-84 ATHSD7 hydroxysteroid dehydrogenase 7 (.1) AT5G50590 256 / 5e-84 ATHSD4 hydroxysteroid dehydrogenase 4 (.1) AT3G47360 256 / 9e-84 ATHSD3 hydroxysteroid dehydrogenase 3 (.1) AT4G10020 254 / 1e-81 ATHSD5 hydroxysteroid dehydrogenase 5 (.1) AT5G65205 102 / 5e-25 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G10050 100 / 5e-24 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031448 [exp] 652 / 0 AT5G50600 378 / 3e-131 hydroxysteroid dehydrogenase 1 (.1) Lus10032556 [exp] 534 / 0 AT5G50600 411 / 4e-144 hydroxysteroid dehydrogenase 1 (.1) Lus10043187 [exp] 517 / 0 AT5G50600 404 / 4e-141 hydroxysteroid dehydrogenase 1 (.1) Lus10016748 [exp] 348 / 3e-117 AT5G50770 360 / 4e-122 hydroxysteroid dehydrogenase 6 (.1) Lus10022441 [exp] 341 / 8e-117 AT5G50770 349 / 3e-120 hydroxysteroid dehydrogenase 6 (.1) Lus10022442 [exp] 268 / 2e-88 AT3G47350 282 / 1e-94 hydroxysteroid dehydrogenase 2 (.1.2) Lus10041045 [exp] 233 / 2e-73 AT4G10020 506 / 3e-180 hydroxysteroid dehydrogenase 5 (.1) Lus10006178 [exp] 223 / 2e-70 AT4G10020 485 / 8e-173 hydroxysteroid dehydrogenase 5 (.1) Lus10009467 [exp] 219 / 4e-68 AT4G10020 501 / 1e-178 hydroxysteroid dehydrogenase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G100000 [exp] 313 / 6e-106 AT5G50690 298 / 8e-101 hydroxysteroid dehydrogenase 7 (.1) Potri.012G101900 [exp] 310 / 6e-105 AT5G50690 287 / 9e-97 hydroxysteroid dehydrogenase 7 (.1) Potri.015G099900 [exp] 305 / 7e-103 AT5G50700 285 / 5e-95 hydroxysteroid dehydrogenase 1 (.1) Potri.012G102000 [exp] 289 / 1e-96 AT5G50700 279 / 7e-93 hydroxysteroid dehydrogenase 1 (.1) Potri.016G048800 [exp] 286 / 2e-95 AT5G50690 284 / 2e-95 hydroxysteroid dehydrogenase 7 (.1) Potri.016G048900 [exp] 284 / 2e-94 AT5G50690 275 / 2e-91 hydroxysteroid dehydrogenase 7 (.1) Potri.019G073200 [exp] 240 / 9e-77 AT4G10020 494 / 4e-176 hydroxysteroid dehydrogenase 5 (.1) Potri.013G100200 [exp] 234 / 1e-74 AT4G10020 506 / 0.0 hydroxysteroid dehydrogenase 5 (.1) Potri.007G086600 [exp] 96 / 4e-22 AT5G10050 416 / 2e-147 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G149201 [exp] 85 / 1e-18 AT1G54870 378 / 3e-132 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10001511 pacid=23157250 polypeptide=Lus10001511 locus=Lus10001511.g ID=Lus10001511.BGIv1.0 annot-version=v1.0 ATGGATCTGATTCATATGTTCCTCAACTTGGTAGCTCCCCCCTTCACGTTCTTCTCACTGTGTTTCCTCCTCCCTCCTTACCTACTGCTAAAGGCCTTCA CCTCCGCGGTGTCGTTGGTGTTCGGCGAGAATGTCTCCGGCAAGGTCGTCCTCATCACCGGCGCCTCCTCTGGCATCGGCGAGCATTTGGCTTATGAGTA TGCGAGCAAAGGTGCATTTCTAGCACTGGCGGCCCGCAGAGAGAAAGGGCTCAGAGAAGTAGGCGACCTCGCCGTCGAATTAGGATCTCCAGAAGTGATC ACCATCATCGGAGATGTCCAGAACGTGAACGACTGCCGAAGAATCGTCCACGAAACTGTGAATCATTTCGGCAGATTGGATCACTTGGTGAACAATGCCG GACTCAGTTCGGTCAGCTACTTCGAGAACGTAAAGGACATCACCGACTTCCGAACCATAATGGACACCAACTTCTGGGGATCAGCTTACATGACCAAATT CGCAATCCCGCACTTGCGAGAGACGGCTGGAAAGATTGTTGCTATTGCCTCCGCAGCTTCGTGGCTTCCCGAACCCATGACCAGCATCTACAATGCAAGC AAAGCAGCTACAGTAGCCATGTTCGAGACCCTAAGAGTGGAGCTAAGCCCCGACATCGGGGTCCTGATCGTCACCCCAGGCTACATCGAGTCGGAACTAA CAACAGGGAAGTTCCTAACTCCCGAAGGCAGGATGGACGTCGACCACGAATTACGAGACGCGAAAGTGGGTCCGATGCCAGTGTATTCCGCGGAAGCCAC CGCCAGGGCGATCGTGAAGAGTGCATGCAGAGGGGACAAATACCTGACGGTGCCCGGGTGGGTTAGGACTTCGTGGCTCTGGAAGATCTTCTGCCCAGAT GCCGTCGAGTTGTTTTACCGCTCGATGTTCACGACCGGTAGCGGCGGTGGTTATGAAACAGAGGCGCCCAGCAAGAGTGTGCTGGATATGACTGGTGCTC AGAGATTGCTGTACCCTGATTCTGTGCAGAATCATTACGCTAAAGCTGACTAA
AA sequence Show only first row Show all	>Lus10001511 pacid=23157250 polypeptide=Lus10001511 locus=Lus10001511.g ID=Lus10001511.BGIv1.0 annot-version=v1.0 MDLIHMFLNLVAPPFTFFSLCFLLPPYLLLKAFTSAVSLVFGENVSGKVVLITGASSGIGEHLAYEYASKGAFLALAARREKGLREVGDLAVELGSPEVI TIIGDVQNVNDCRRIVHETVNHFGRLDHLVNNAGLSSVSYFENVKDITDFRTIMDTNFWGSAYMTKFAIPHLRETAGKIVAIASAASWLPEPMTSIYNAS KAATVAMFETLRVELSPDIGVLIVTPGYIESELTTGKFLTPEGRMDVDHELRDAKVGPMPVYSAEATARAIVKSACRGDKYLTVPGWVRTSWLWKIFCPD AVELFYRSMFTTGSGGGYETEAPSKSVLDMTGAQRLLYPDSVQNHYAKAD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50600		ATHSD1	hydroxysteroid dehydrogenase 1...		Lus10001511 [exp]	0	1
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10027891 [exp]	7.0	0.9972
AT2G06040			unknown protein		Lus10017169 [exp]	8.2	0.9123
					Lus10026042 [exp]	9.9	0.9972
AT5G24070			Peroxidase superfamily protein...		Lus10027049 [exp]	12.1	0.9972
					Lus10040041 [exp]	13.6	0.9366
					Lus10027530 [exp]	14.0	0.9972
AT1G69530		ATHEXPALPHA1.2,...	EXPANSIN 1, expansin A1 (.1.2....		Lus10003438 [exp]	15.7	0.9972
AT2G23640		RTNLB13	Reticulan like protein B13 (.1...		Lus10039905 [exp]	16.5	0.9108
AT5G49900			Beta-glucosidase, GBA2 type fa...		Lus10023340 [exp]	17.1	0.9972
					Lus10024762 [exp]	18.5	0.9972

Compare expression of checked genes

Lus10001511 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.