Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09460 278 / 2e-94 MYB ATMYB6, ATMYB8 myb domain protein 6 (.1) AT1G22640 264 / 2e-88 MYB AtMYB3 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) AT4G38620 263 / 1e-87 MYB AtMYB4 myb domain protein 4 (.1) AT2G16720 254 / 2e-84 MYB AtY49, AtMYB7 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) AT1G35515 248 / 6e-83 MYB MYB8, HOS10 high response to osmotic stress 10 (.1) AT4G34990 249 / 1e-82 MYB ATMYB32 myb domain protein 32 (.1) AT5G16770 221 / 8e-71 MYB ATMYB9 myb domain protein 9 (.1.2) AT3G02940 219 / 6e-70 MYB ATMYB107 myb domain protein 107 (.1) AT4G21440 214 / 1e-67 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT4G28110 210 / 6e-67 MYB ATMYB41 myb domain protein 41 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009448 [exp] 454 / 3e-163 AT4G09460 290 / 2e-99 myb domain protein 6 (.1) Lus10000411 [exp] 338 / 3e-117 AT4G09460 300 / 5e-103 myb domain protein 6 (.1) Lus10016948 [exp] 331 / 1e-114 AT4G09460 301 / 1e-103 myb domain protein 6 (.1) Lus10033473 [exp] 239 / 3e-79 AT2G16720 249 / 2e-83 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Lus10028435 [exp] 238 / 1e-78 AT2G16720 246 / 2e-82 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Lus10014129 [exp] 251 / 6e-78 AT4G38620 284 / 5e-90 myb domain protein 4 (.1) Lus10041888 [exp] 236 / 7e-78 AT4G38620 245 / 5e-82 myb domain protein 4 (.1) Lus10018418 [exp] 215 / 4e-68 AT4G21440 334 / 5e-114 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10002593 [exp] 210 / 2e-66 AT4G21440 330 / 2e-112 A. THALIANA MYB 4, MYB-like 102 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G109300 [exp] 288 / 3e-97 AT4G09460 262 / 9e-88 myb domain protein 6 (.1) Potri.019G081500 [exp] 284 / 9e-96 AT1G22640 277 / 1e-93 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) Potri.004G174400 [exp] 269 / 2e-90 AT4G38620 305 / 2e-104 myb domain protein 4 (.1) Potri.009G134000 [exp] 263 / 4e-88 AT4G38620 305 / 2e-104 myb domain protein 4 (.1) Potri.005G112000 [exp] 259 / 9e-87 AT4G38620 277 / 5e-94 myb domain protein 4 (.1) Potri.T011400 [exp] 259 / 6e-86 AT4G38620 257 / 5e-85 myb domain protein 4 (.1) Potri.T011525 [exp] 259 / 6e-86 AT4G38620 257 / 5e-85 myb domain protein 4 (.1) Potri.004G138000 [exp] 256 / 2e-84 AT4G38620 257 / 8e-85 myb domain protein 4 (.1) Potri.010G114000 [exp] 238 / 7e-79 AT4G38620 243 / 6e-81 myb domain protein 4 (.1) Potri.017G128900 [exp] 223 / 1e-72 AT4G09460 222 / 6e-73 myb domain protein 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10001548 pacid=23170447 polypeptide=Lus10001548 locus=Lus10001548.g ID=Lus10001548.BGIv1.0 annot-version=v1.0 ATGGGAAGGTCTCCTTGCTGCGAGAAAGCTCACACCAACAAAGGCGCCTGGACGAAAGAAGAGGATCAGCGGTTGATCGATTACATCCGCTCTCATGGCG AAGGTTGCTGGCGATCCCTCCCCAAATCCGCCGGGCTGCTTCGGTGCGGGAAGAGTTGCAGACTGAGATGGATTAATTACTTGAGACCCGATCTGAAGAG AGGAAATTTCACTGAATCGGAGGATGAATTGATTGTTAAGCTCCATAGCTTGCTCGGAAACAAATGGTCTTTGATTGCTGGGAGATTACCGGGACGAACT GATAACGAGATCAAGAATTACTGGAATACCCACATCAAGAGGAAGCTTCTCAGCCTCGGAATTGACCCACAGACTCACCGTCCGCTCAATGAGAAACTCT CCGCCGGAGCTGCGGATTCGGTCCAGTTGAACCGGGTGATCAAGACCAACGGTGTGTTGGATTTCCAATTCCAGACGGTGAAAGCAGAGTCCGGTGAGGA GAATAACTGCTCCAGCAGTGGGATGACCACCGATGATGAGCCGTCGCCGTTGGAGACAGCGGCGACGGCGAGGGAGGAGGTTGATTTGAATTTGGAGCTG ACGATTGGAGTGGGTTCTTCTTCTTTTTCTCCTGATCTACCTGCTAACTTGGGGAATTCGGCGGACTCGAAGGCTCGGTTTCGGCCGGTGTTTCGGCTTT CGGGTGGTGCGGTGGTGGAGGAGGAGGTGTGTTTGTGTTGGCAATTGGGGGTTCAGGAAGGTGTGTGTTGGCAATTGGGGGTCAAGGAAGGAGGTGGCGG GGGCTGCCGGTGCCGGTTTGCCGGCGGGAGGCAGAGTAGATATCAGTGA
AA sequence Show only first row Show all	>Lus10001548 pacid=23170447 polypeptide=Lus10001548 locus=Lus10001548.g ID=Lus10001548.BGIv1.0 annot-version=v1.0 MGRSPCCEKAHTNKGAWTKEEDQRLIDYIRSHGEGCWRSLPKSAGLLRCGKSCRLRWINYLRPDLKRGNFTESEDELIVKLHSLLGNKWSLIAGRLPGRT DNEIKNYWNTHIKRKLLSLGIDPQTHRPLNEKLSAGAADSVQLNRVIKTNGVLDFQFQTVKAESGEENNCSSSGMTTDDEPSPLETAATAREEVDLNLEL TIGVGSSSFSPDLPANLGNSADSKARFRPVFRLSGGAVVEEEVCLCWQLGVQEGVCWQLGVKEGGGGGCRCRFAGGRQSRYQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G09460	MYB	ATMYB6, ATMYB8	myb domain protein 6 (.1)		Lus10001548 [exp]	0	1
AT4G09460	MYB	ATMYB6, ATMYB8	myb domain protein 6 (.1)		Lus10009448 [exp]	2.6	0.8409
AT1G12820		IPS1, AFB3	auxin signaling F-box 3 (.1)		Lus10006738 [exp]	2.8	0.8085
					Lus10037674 [exp]	11.1	0.7559
AT1G10150		ATPP2-A10	Carbohydrate-binding protein (...		Lus10011718 [exp]	14.4	0.7710
AT5G02230			Haloacid dehalogenase-like hyd...		Lus10010848 [exp]	19.9	0.7628
AT3G62980		AtTIR1, TIR1	TRANSPORT INHIBITOR RESPONSE 1...		Lus10020086 [exp]	19.9	0.7843
AT4G13020		MHK	Protein kinase superfamily pro...		Lus10003155 [exp]	20.8	0.7915
AT3G49760	bZIP	ATBZIP5	basic leucine-zipper 5 (.1)		Lus10007726 [exp]	23.9	0.7005
AT1G52320			unknown protein		Lus10025777 [exp]	27.2	0.8003
AT4G29950			Ypt/Rab-GAP domain of gyp1p su...		Lus10001435 [exp]	28.0	0.7787

Compare expression of checked genes

Lus10001548 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.