Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16060 288 / 2e-95 AP2_ERF ADAP ARIA-interacting double AP2 domain protein (.1.2) AT1G79700 279 / 3e-92 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2) AT3G54320 234 / 2e-73 AP2_ERF ATWRI1, ASML1, WRI1 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) AT5G57390 214 / 2e-64 AP2_ERF PLT5, EMK, CHO1, AIL5 PLETHORA 5, EMBRYOMAKER, CHOTTO 1, AINTEGUMENTA-like 5 (.1) AT1G51190 211 / 5e-63 AP2_ERF PLT2 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) AT3G20840 211 / 7e-63 AP2_ERF PLT1 PLETHORA 1, Integrase-type DNA-binding superfamily protein (.1) AT5G17430 209 / 3e-62 AP2_ERF BBM BABY BOOM, Integrase-type DNA-binding superfamily protein (.1) AT1G72570 205 / 3e-62 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G10510 199 / 3e-58 AP2_ERF PLT3, AIL6 PLETHORA 3, AINTEGUMENTA-like 6 (.1.2.3) AT5G65510 196 / 5e-58 AP2_ERF PLT7, AIL7 PLETHORA 7, AINTEGUMENTA-like 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005513 [exp] 490 / 8e-175 AT1G79700 227 / 5e-72 Integrase-type DNA-binding superfamily protein (.1.2) Lus10024101 [exp] 343 / 1e-116 AT1G16060 308 / 1e-103 ARIA-interacting double AP2 domain protein (.1.2) Lus10041618 [exp] 334 / 6e-113 AT1G79700 310 / 1e-104 Integrase-type DNA-binding superfamily protein (.1.2) Lus10008939 [exp] 238 / 6e-74 AT3G54320 303 / 2e-98 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10036719 [exp] 234 / 4e-73 AT3G54320 288 / 3e-93 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10028880 [exp] 235 / 9e-73 AT3G54320 298 / 1e-96 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10030671 [exp] 233 / 1e-72 AT3G54320 280 / 5e-90 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10037209 [exp] 233 / 1e-72 AT3G54320 286 / 1e-92 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10005253 [exp] 232 / 2e-72 AT3G54320 282 / 6e-91 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G102200 [exp] 420 / 4e-147 AT1G16060 289 / 5e-96 ARIA-interacting double AP2 domain protein (.1.2) Potri.003G185300 [exp] 383 / 2e-132 AT1G16060 291 / 5e-97 ARIA-interacting double AP2 domain protein (.1.2) Potri.006G179900 [exp] 361 / 7e-124 AT1G16060 276 / 3e-91 ARIA-interacting double AP2 domain protein (.1.2) Potri.001G041500 [exp] 333 / 2e-112 AT1G16060 279 / 1e-91 ARIA-interacting double AP2 domain protein (.1.2) Potri.017G078600 [exp] 249 / 8e-80 AT3G54320 289 / 2e-94 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Potri.010G092800 [exp] 239 / 3e-75 AT3G54320 259 / 2e-82 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Potri.010G247200 [exp] 229 / 1e-71 AT3G54320 337 / 8e-113 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Potri.008G011900 [exp] 223 / 9e-70 AT3G54320 359 / 3e-122 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Potri.018G091600 [exp] 215 / 1e-64 AT5G57390 422 / 9e-142 PLETHORA 5, EMBRYOMAKER, CHOTTO 1, AINTEGUMENTA-like 5 (.1) Potri.006G167700 [exp] 214 / 2e-64 AT5G57390 432 / 2e-146 PLETHORA 5, EMBRYOMAKER, CHOTTO 1, AINTEGUMENTA-like 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10001553 pacid=23156101 polypeptide=Lus10001553 locus=Lus10001553.g ID=Lus10001553.BGIv1.0 annot-version=v1.0 ATGGCGAAATTGTCGCAACCGAAACACAATAGCAACGGCAGTAGTAGTAGCAATAGTATTAGTCACGGTCAACAATTAGGGGTCAACAAAAGTATTCCAT CATCATCCTCTAATGGCGTCACCAAGGTAAAGAGGACTAGGCGAACCGTGCCACGTGACTCTCCGCCCCAACGTAGCTCCATCTATCGAGGTGTTACAAG GCACCGATGGACCGGCCGGTATGAAGCTCATTTGTGGGATAAGAATTGTTGGAATGAGTCTCAAAACAAGAAAGGACGGCAAGGAGCTTATGATGATGAA GAAGCCGCAGCTCATGCTTATGACTTAGCAGCTCTCAAGTACTGGGGTCCTGAAACCATACTTAACTTTCCGTTGGCGACATATGATAAGGAGCTGAAGG AAATGGAAGGACAGTCAAGAGAAGAGTACATTGGGTCACTCAGGAGGAAAAGCAGTGGATTTTCTCGTGGTGTTTCGAAGTATAGAGGGGTTGCCAGGCA TCATCATAATGGAAGGTGGGAAGCCAGGATCGGGAGGGTGTTTGGCAACAAGTATCTCTACCTTGGGACATATGCTACCCAAGAAGAAGCTGCCACAGCA TATGATATGGCAGCAATCGAGTACCGTGGCCTTAATGCCGTCACTAATTTTGACCTGAGCCGTTATATTAAGTGGCTGAAACCTAAACAAAATGCTCCTG AATTAGCTACTGAAAACCCTAACCCTATAGCTACTTTAGCCGCAAACCCTAGCCGTGAGCTTGGATTCAACTTCTTCCAAACCCAGCCACCTCAAGATCA GCAACAAACTTATCAGTCGATTGAGCCAACTCCATCCACGACAGTCGTCCAGCCGAGATCTTCGACCAATACCAAGTCAGCTTTAGGGTTGTTGCTCCAA TCCTCTAAATTCAAGGAAATGATGGAGATGACATCAGTAGTGGATCGCCCTTTAACTCCCACAAATCTTGACCTCGAACCTCCACAATGCAGCTTTCCCG AAGATATTCAGACCTACTTTGGGTCCCAGGATTCGAGCAATTATGAAGAAAGTAGTGATATGATATTTGGCGACATCAACTCGTTCGTACCACCGATGTT CAATTGTGATTTCAACGCATAA
AA sequence Show only first row Show all	>Lus10001553 pacid=23156101 polypeptide=Lus10001553 locus=Lus10001553.g ID=Lus10001553.BGIv1.0 annot-version=v1.0 MAKLSQPKHNSNGSSSSNSISHGQQLGVNKSIPSSSSNGVTKVKRTRRTVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQGAYDDE EAAAHAYDLAALKYWGPETILNFPLATYDKELKEMEGQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATA YDMAAIEYRGLNAVTNFDLSRYIKWLKPKQNAPELATENPNPIATLAANPSRELGFNFFQTQPPQDQQQTYQSIEPTPSTTVVQPRSSTNTKSALGLLLQ SSKFKEMMEMTSVVDRPLTPTNLDLEPPQCSFPEDIQTYFGSQDSSNYEESSDMIFGDINSFVPPMFNCDFNA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16060	AP2_ERF	ADAP	ARIA-interacting double AP2 do...		Lus10001553 [exp]	0	1
AT3G18400	NAC	ANAC058	NAC domain containing protein ...		Lus10038937 [exp]	2.8	0.9519
AT3G24570			Peroxisomal membrane 22 kDa (M...		Lus10011679 [exp]	3.0	0.9533
AT1G34670	MYB	ATMYB93	myb domain protein 93 (.1)		Lus10041142 [exp]	5.5	0.9479
AT5G10280	MYB	ATMYB92, AtMYB6...	myb domain protein 92 (.1)		Lus10036472 [exp]	6.3	0.9461
AT1G79700	AP2_ERF		Integrase-type DNA-binding sup...		Lus10005513 [exp]	6.6	0.9244
AT2G37530			unknown protein		Lus10024416 [exp]	7.7	0.9384
AT3G11780			MD-2-related lipid recognition...		Lus10021256 [exp]	9.8	0.9368
AT2G48140		EDA4	embryo sac development arrest ...		Lus10014683 [exp]	11.8	0.9341
AT5G19970			unknown protein		Lus10019451 [exp]	13.0	0.9242
AT2G40370		LAC5	laccase 5 (.1)		Lus10007531 [exp]	13.1	0.9302

Compare expression of checked genes

Lus10001553 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.