Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06060 315 / 2e-106 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29260 294 / 1e-97 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G07440 279 / 1e-92 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G29360 278 / 3e-92 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29290 278 / 5e-92 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G29370 276 / 2e-91 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29150 273 / 4e-90 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29350 273 / 5e-90 SAG13 senescence-associated gene 13 (.1.2.3) AT1G07450 268 / 3e-88 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29340 256 / 1e-83 NAD-dependent epimerase/dehydratase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040737 [exp] 333 / 1e-113 AT2G29350 332 / 3e-115 senescence-associated gene 13 (.1.2.3) Lus10016494 [exp] 327 / 5e-111 AT5G06060 333 / 7e-116 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040736 [exp] 300 / 2e-100 AT5G06060 382 / 3e-135 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040271 [exp] 296 / 5e-99 AT5G06060 388 / 2e-137 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004704 [exp] 292 / 2e-97 AT5G06060 387 / 3e-137 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040730 [exp] 291 / 3e-96 AT2G29260 405 / 2e-142 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016498 [exp] 274 / 2e-90 AT5G06060 351 / 7e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10010873 [exp] 273 / 5e-90 AT5G06060 308 / 2e-106 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040735 [exp] 271 / 2e-89 AT5G06060 341 / 4e-119 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G059100 [exp] 308 / 8e-104 AT5G06060 416 / 8e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G245000 [exp] 305 / 1e-102 AT2G29150 343 / 9e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G244900 [exp] 293 / 5e-97 AT2G29260 387 / 4e-135 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G026000 [exp] 285 / 4e-95 AT2G29290 362 / 2e-127 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.006G089800 [exp] 283 / 4e-94 AT2G29150 307 / 2e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G039500 [exp] 280 / 1e-92 AT2G29150 351 / 5e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.010G142600 [exp] 275 / 5e-91 AT2G29290 354 / 3e-124 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.005G039300 [exp] 274 / 2e-90 AT2G29150 356 / 7e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G089700 [exp] 270 / 8e-89 AT5G06060 320 / 6e-111 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G026100 [exp] 218 / 6e-69 AT2G29150 284 / 5e-97 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10001560 pacid=23154570 polypeptide=Lus10001560 locus=Lus10001560.g ID=Lus10001560.BGIv1.0 annot-version=v1.0 ATGGTATCAGCAGAAGGAAGAAGATGGTCTCTCTCAGGAATGTCTGCTCTTGTCACAGGAGCACTGCACCAACTGACGAGGAGTTTGGGGTGCGAGTGGG GGAAAGACTACATTCAAGTCAACAGTGTCACGCCCGGAAGCATCATGACGCCTCTCGCCGAACCTCATATGAAAGATCAAAGGATTGCTGAAGCTTCTAA ATCAAGAACACCCCTGGGCCGATTAGGGATGCCGAATGAGATATCTTCTGCAGTAGCATTCCTGTGCCTTCCAGCTGCATCTTACATTACTGGACAGAAA GCCGAGGAGAATGCTTACTCTCAAACTGTAAACAAAAAGATCACTGGATCTCAAAATTGGAGCAGAAACAGAAAGCAGCTAGCAGAGATGACGTCAGCAA TGGCGGAATCAGAAGCTGGAGGAAAAAGCCACAGAAGATGGACTCTTAAGGGGATGACAGCTCTAGTAACCGGCGGTACCAAAGGAATCGGGCACGCTAT TGTGGAGGAACTGGCGAAGCAAGGAGCTTCCGTACACACTTGCTCCCGCAACGAGGAGGAGCTGAATCAATGCCTAGAAGATTGGAAAGGAAAGGGTTTT GATGGGTTGGTGACTGGATCCGTCTGCGACGTTTCTTTTGGCGAGGAAAGAGAGAAGCTCGTCGGCGTTGTGGCGTCGGTCTTCGCCGGCAAACTTAACA TCCTTGTGAACAATGCGGCAACAGGATTCTGGAAACCAACCACGCAAGTAACAGAAGAAGAGCTCTCCCATGTGTTCTCCACCAACTTCAAGTCATGTTA CAACCTCTGCCAGCTTGCTCATCCTCTCCTGAAGAGCTCCGGATCCGGAAGCATCGTGTTCATATCTTCCGTCGTCGGTTCCACATCTGTAGGTTATCTC TCTGTTTACGGAGCAACCAAAGGAGCAATCAATCAGCTTACCAGAAGCTTGGCTTGCGAATGGGCGGAAGACAACATCAGGACCAACTCCGTCGCACCTT GGTACACCAGAACTCCTAGCGTAGAGCAGGCTCTTGAACGAGAAGAATTCATGGAAGGAGTGCTGCACCGGACGCCGTTAAGGCGAATAGCTGAGCCGGA AGACGTCTCTGGACTTGTGGCTTTCTTATGTATGCCGGCGGCATGTTACATTACTGGCCAGATCATTTCTGTTGACGGTGGATTCTCTGCCAATGGCTTC TCCTTGTGA
AA sequence Show only first row Show all	>Lus10001560 pacid=23154570 polypeptide=Lus10001560 locus=Lus10001560.g ID=Lus10001560.BGIv1.0 annot-version=v1.0 MVSAEGRRWSLSGMSALVTGALHQLTRSLGCEWGKDYIQVNSVTPGSIMTPLAEPHMKDQRIAEASKSRTPLGRLGMPNEISSAVAFLCLPAASYITGQK AEENAYSQTVNKKITGSQNWSRNRKQLAEMTSAMAESEAGGKSHRRWTLKGMTALVTGGTKGIGHAIVEELAKQGASVHTCSRNEEELNQCLEDWKGKGF DGLVTGSVCDVSFGEEREKLVGVVASVFAGKLNILVNNAATGFWKPTTQVTEEELSHVFSTNFKSCYNLCQLAHPLLKSSGSGSIVFISSVVGSTSVGYL SVYGATKGAINQLTRSLACEWAEDNIRTNSVAPWYTRTPSVEQALEREEFMEGVLHRTPLRRIAEPEDVSGLVAFLCMPAACYITGQIISVDGGFSANGF SL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10001560 [exp]	0	1
AT2G30390		FC2, FC-II, ATF...	ferrochelatase 2 (.1.2)		Lus10019224 [exp]	1.4	0.9316
AT1G78600	CO	BBX22, DBB3, ST...	SALT TOLERANCE HOMOLOG 3, DOUB...		Lus10038147 [exp]	2.4	0.9252
AT2G30390		FC2, FC-II, ATF...	ferrochelatase 2 (.1.2)		Lus10004292 [exp]	3.2	0.9121
AT5G47240		ATNUDT8	nudix hydrolase homolog 8 (.1)		Lus10040169 [exp]	6.0	0.9113
AT1G51110			Plastid-lipid associated prote...		Lus10010444 [exp]	7.9	0.9305
AT2G31040			ATP synthase protein I -relate...		Lus10020702 [exp]	12.0	0.8777
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10008555 [exp]	12.2	0.8635
AT2G04700			ferredoxin thioredoxin reducta...		Lus10039449 [exp]	13.0	0.9150
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10027576 [exp]	13.5	0.8843
AT3G26580			Tetratricopeptide repeat (TPR)...		Lus10036856 [exp]	13.9	0.8611

Compare expression of checked genes

Lus10001560 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.