Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07510 1114 / 0 FTSH10 FTSH protease 10 (.1) AT2G29080 1095 / 0 FTSH3 FTSH protease 3 (.1) AT1G50250 426 / 3e-138 FTSH1 FTSH protease 1 (.1) AT5G42270 419 / 7e-136 FTSH5, VAR1 VARIEGATED 1, FtsH extracellular protease family (.1) AT5G15250 402 / 2e-129 FTSH6, ATFTSH6 FTSH protease 6 (.1.2) AT2G30950 397 / 2e-127 FTSH2, VAR2 VARIEGATED 2, FtsH extracellular protease family (.1) AT1G06430 395 / 2e-126 FTSH8 FTSH protease 8 (.1) AT2G26140 368 / 4e-116 FTSH4 FTSH protease 4 (.1) AT5G53170 370 / 1e-115 FTSH11 FTSH protease 11 (.1) AT5G58870 353 / 1e-109 FTSH9 FTSH protease 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016516 [exp] 1165 / 0 AT1G07510 1111 / 0.0 FTSH protease 10 (.1) Lus10040785 [exp] 1111 / 0 AT1G07510 1078 / 0.0 FTSH protease 10 (.1) Lus10004973 [exp] 998 / 0 AT1G07510 815 / 0.0 FTSH protease 10 (.1) Lus10004972 [exp] 694 / 0 AT1G07510 580 / 0.0 FTSH protease 10 (.1) Lus10012277 [exp] 423 / 2e-140 AT1G50250 935 / 0.0 FTSH protease 1 (.1) Lus10021824 [exp] 427 / 3e-138 AT5G42270 934 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10016003 [exp] 422 / 2e-136 AT5G42270 1129 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10001054 [exp] 397 / 2e-127 AT2G30950 1154 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Lus10001420 [exp] 397 / 4e-126 AT2G30950 1155 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G033600 [exp] 1165 / 0 AT1G07510 1114 / 0.0 FTSH protease 10 (.1) Potri.016G099800 [exp] 1101 / 0 AT2G29080 1123 / 0.0 FTSH protease 3 (.1) Potri.002G012000 [exp] 426 / 2e-138 AT5G42270 1094 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.005G249200 [exp] 424 / 9e-138 AT5G42270 1077 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.017G084000 [exp] 400 / 9e-129 AT5G15250 959 / 0.0 FTSH protease 6 (.1.2) Potri.014G139500 [exp] 396 / 8e-127 AT2G30950 1057 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Potri.002G215100 [exp] 395 / 2e-126 AT2G30950 1040 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Potri.015G020700 [exp] 364 / 1e-113 AT5G53170 1096 / 0.0 FTSH protease 11 (.1) Potri.006G227700 [exp] 356 / 2e-111 AT2G26140 1066 / 0.0 FTSH protease 4 (.1) Potri.012G000700 [exp] 357 / 4e-111 AT5G53170 1076 / 0.0 FTSH protease 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF01434 [flax] [poplar] Peptidase_M41 Peptidase family M41 CL0126 [flax] [poplar] PF06480 [flax] [poplar] FtsH_ext FtsH Extracellular CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10001573 pacid=23154588 polypeptide=Lus10001573 locus=Lus10001573.g ID=Lus10001573.BGIv1.0 annot-version=v1.0 ATGATATTCTCCAAGCTCAGCCGCTCCTCCCGCGGCTCCAATCCTTCTAAATTGAAGAATATATTGCGCGGTGGTTACGGTAGATCGACGATTACTGGAT TGCCGGTCGGAGGTTCGTATGCAAATCGAGTTGGCGATGGAGCTGGATTTCTGAGGAGCTATTTAACTTCTATTGGAGCTGGCAAGAGCTCCGGTTCTGT GAAGAAAGCGTTCTCAAACCTCAACTCCGTTCTCGCTAACCCTAAACTTCGGCGATTCTTCTCCAGCGAAGCTCCTAAGAAGAAGAATTATGAGAACTTC TTTCCCAAAGGAAAGAAGGAAGCTCCCAAGGGGGATGGACAGAAAGCTGATTCCAAAGAGAACTCAAATGCTGATGATGAATGGAGCTTTCAGAAGCTAT TTTCGAAGCAATTCAACATGCTAACCCCTCTGTTAGTCATTGGGGTGCTTCTTTCTTCCTTCCCTTTTGGCCAGAATGAGCACCAACAGATCAGTTTCCA AGAGTTCAAGAACAAGCTTCTTGAGCCTGGTTTGGTCGATCATATAGTTGTCTCCAACAAATCAGTTGCAAAAGTTTATGTAAAGAGTGGAACACAAAGC AAAACACTTGGTGATGAAGTCCAAGGTCCTACCACTGGTACCCCTGTCAAAGGACGTGGGGGGCAATATAAATTCTACTTCAATATCGGCAGTCTAGAAG CTTTTGAGGAGAAGCTGGAGGAAGCACAAGAGGCATTGGGGACAGACCCTCATGACTATATTCCCGTTACATATGCATCTGAGGTTGCTTGGTTCCAAGA AATAATGAGGTTCGCACCGACTTTATTGCTTTTGGGAACCATCATGTTCATGGGAAGGCGAATGCAAGGTGGTATAGGCGGCCTTGGAGGTGGTGGTGGA AAAGGTGGCCGTGGTATATTCAACATAGGGAAAGCTCAGATAACCAAGGTGGACAAAAATGCTAAGAATAAGGTCTATTTCAAAGATGTTGCTGGATGTG ACGAGGCAAAGCAGGAAATTATGGAGTTCGTACATTTCCTCAAGAATCCTAAAAAGTATGAAGAGCTGGGAGCAAAAATTCCAAAAGGGGCTCTTTTAGT GGGTCCTCCGGGGACTGGGAAGACCCTTCTAGCCAAGGCAACAGCTGGGGAATCTGCTGTGCCGTTCTTGTCGATTTCCGGTTCTGATTTCATGGAGATG TTTGTTGGTGTTGGTCCATCTAGAGTAAGGAACTTGTTTCAAGAAGCTAGACAGTGTGCTCCAAGTATCATATTTATTGATGAAATTGATGCAATTGGCC GGGCAAGAGGTCGCGGTGGCTTCAGTGGTGGCAATGACGAACGAGAAAGTACCCTTAATCAGTTGTTGGTAGAAATGGATGGCTTTGCTACTACTGCTGG AGTAGTTGTCCTTGCTGGCACCAACAGACCTGATATATTAGATAAGGCTCTTTTGAGGCCCGGGAGATTCGACAGGCAGATCACCATTGATAAGCCAGAT ATTAAAGGCCGGGAACAGATATTCCAGATATATTTGAAGAAACTCAAACTTGATCAGGAACCATCATATTTCTCCGAAAGGCTTTCGGCACTCACTCCTG GATTTGCAGGAGCAGACATCGCCAATGTCTGTAATGAAGCTGCTTTGATTGCTGCAAGGAATGATGGAAAAGAAATCACTATGGACAACTTCGAGTCAGC CATAGACCGGGTGATTGGTGGCTTAGAGAAGAAGAACAGGGTCATAAGCAAGCTGGAACGCCGCACTGTTGCATACCATGAATCAGGCCATGCTGTGACC GGCTGGTTCCTAGAGCACGCAGAACCTCTCTTGAAAGTCACCATTGTTCCTCGTGGGACCGCTGCGCTTGGATTCGCTCAGTACGTTCCTAACGAGAACC TTCTGTTGACCAAGGAGCAGCTTTTCGACATGACTTGTATGACCCTCGGTGGCCGAGCAGCTGAACAGGTAATGATTGGTAAAATCTCAACAGGAGCCCA AAACGACTTGGAAAAGGTGACCAAGATGACGTATGCCCAAGTTGCAGTGTACGGCTTCAGCGACAAGGTGGGTCTCCTATCTTTCCCGCAAAGAGAAGAC TCAATGGAGATGACCAAGCCGTACAGCAGCAAGACGGCAGCCCTCATCGATGGTGAAGTCCGGGAGTGGGTAGGGAAAGCCTACGAGCGCACTTTACAAC TCGTGGAAGAACACAAGGAGCAGGTTGCCCAGATTGCAGAGATGTTACTAGAAAAAGAAGTCCTCCACCAGGACGATCTGGCTCGGATCCTTGGTGAGAG GCCGTTTAAGCCCGCTGAGGCCACAAATTACGATAAATTCAAGGAAGGGTTCAACAAGGAGGAAGAGAGCAAGCCGGTGGAGAGCTCAACGATTGTGGAG GAGGATGATGATTCTACTCCGTTACCGGTTGTACCGGCCTGA
AA sequence Show only first row Show all	>Lus10001573 pacid=23154588 polypeptide=Lus10001573 locus=Lus10001573.g ID=Lus10001573.BGIv1.0 annot-version=v1.0 MIFSKLSRSSRGSNPSKLKNILRGGYGRSTITGLPVGGSYANRVGDGAGFLRSYLTSIGAGKSSGSVKKAFSNLNSVLANPKLRRFFSSEAPKKKNYENF FPKGKKEAPKGDGQKADSKENSNADDEWSFQKLFSKQFNMLTPLLVIGVLLSSFPFGQNEHQQISFQEFKNKLLEPGLVDHIVVSNKSVAKVYVKSGTQS KTLGDEVQGPTTGTPVKGRGGQYKFYFNIGSLEAFEEKLEEAQEALGTDPHDYIPVTYASEVAWFQEIMRFAPTLLLLGTIMFMGRRMQGGIGGLGGGGG KGGRGIFNIGKAQITKVDKNAKNKVYFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESAVPFLSISGSDFMEM FVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFATTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPD IKGREQIFQIYLKKLKLDQEPSYFSERLSALTPGFAGADIANVCNEAALIAARNDGKEITMDNFESAIDRVIGGLEKKNRVISKLERRTVAYHESGHAVT GWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENLLLTKEQLFDMTCMTLGGRAAEQVMIGKISTGAQNDLEKVTKMTYAQVAVYGFSDKVGLLSFPQRED SMEMTKPYSSKTAALIDGEVREWVGKAYERTLQLVEEHKEQVAQIAEMLLEKEVLHQDDLARILGERPFKPAEATNYDKFKEGFNKEEESKPVESSTIVE EDDDSTPLPVVPA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07510		FTSH10	FTSH protease 10 (.1)		Lus10001573 [exp]	0	1
AT5G03340			ATPase, AAA-type, CDC48 protei...		Lus10016124 [exp]	1.7	0.8951
AT4G08960			phosphotyrosyl phosphatase act...		Lus10040491 [exp]	4.9	0.8862
AT4G39220		ATRER1A	Rer1 family protein (.1)		Lus10019323 [exp]	7.3	0.8840
AT2G20760			Clathrin light chain protein (...		Lus10018480 [exp]	14.1	0.8809
AT1G15130			Endosomal targeting BRO1-like ...		Lus10035265 [exp]	14.1	0.8664
AT4G13010			Oxidoreductase, zinc-binding d...		Lus10002346 [exp]	14.5	0.7875
AT2G36290			alpha/beta-Hydrolases superfam...		Lus10043437 [exp]	18.7	0.7935
AT3G47550			RING/FYVE/PHD zinc finger supe...		Lus10035010 [exp]	19.3	0.8078
AT1G71940			SNARE associated Golgi protein...		Lus10014818 [exp]	20.1	0.8109
AT2G36530		ENO2, LOS2	LOW EXPRESSION OF OSMOTICALLY ...		Lus10002844 [exp]	20.5	0.8757

Compare expression of checked genes

Lus10001573 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.