Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07530 509 / 5e-171 GRAS SCL14, ATGRAS2 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) AT2G29060 496 / 4e-167 GRAS GRAS family transcription factor (.1) AT1G07520 481 / 3e-161 GRAS GRAS family transcription factor (.1) AT2G29065 465 / 1e-155 GRAS family transcription factor (.1) AT5G59450 402 / 1e-131 GRAS SCL11 GRAS family transcription factor (.1) AT2G37650 396 / 5e-128 GRAS SCL9 GRAS family transcription factor (.1) AT3G46600 386 / 1e-127 GRAS GRAS family transcription factor (.1.2.3) AT3G03450 176 / 3e-47 GRAS RGL2 RGA-like 2 (.1) AT1G50600 170 / 5e-45 GRAS SCL5 scarecrow-like 5 (.1) AT1G66350 167 / 1e-44 GRAS RGL1 RGA-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004968 [exp] 1053 / 0 AT1G07530 584 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10016521 [exp] 493 / 9e-165 AT1G07530 764 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10040790 [exp] 477 / 8e-159 AT1G07530 762 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10040787 [exp] 457 / 2e-152 AT1G07530 555 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10024384 [exp] 431 / 7e-144 AT2G37650 610 / 0.0 GRAS family transcription factor (.1) Lus10023404 [exp] 439 / 1e-143 AT1G07530 595 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10040284 [exp] 436 / 6e-143 AT1G07530 600 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10016519 [exp] 380 / 8e-127 AT1G07530 449 / 3e-153 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10010845 [exp] 365 / 9e-117 AT2G37650 571 / 0.0 GRAS family transcription factor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G032800 [exp] 580 / 0 AT1G07530 666 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.001G241800 [exp] 578 / 0 AT1G07530 665 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.009G032700 [exp] 522 / 3e-176 AT1G07530 788 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.001G241700 [exp] 502 / 2e-168 AT1G07530 759 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.009G033300 [exp] 459 / 2e-152 AT1G07530 514 / 4e-173 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.001G242100 [exp] 452 / 6e-150 AT2G29060 563 / 0.0 GRAS family transcription factor (.1) Potri.006G086600 [exp] 453 / 1e-149 AT2G37650 723 / 0.0 GRAS family transcription factor (.1) Potri.008G057400 [exp] 442 / 1e-145 AT2G37650 568 / 0.0 GRAS family transcription factor (.1) Potri.001G242000 [exp] 416 / 2e-136 AT2G29060 488 / 9e-165 GRAS family transcription factor (.1) Potri.010G202300 [exp] 409 / 1e-133 AT1G07530 498 / 2e-167 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10001577 pacid=23154569 polypeptide=Lus10001577 locus=Lus10001577.g ID=Lus10001577.BGIv1.0 annot-version=v1.0 ATGGATCCAAACAACCCAGAATTCTCCATCTACGATCTTCAGTTCTCAAACTCCTTCAATCCGCCAGAAGATTTGGATCTGGCCTTCACCTTCAGCCCAG GAGGAGAATCTTTCATCTTCTCCTCCACCGACGATTCCCCTGTTTCCGATCCCAGCCCCACCACTTCTTCAGGATGGAACCACCCAGATTCATCAGAGCA ACGAAATCAACCGATTCATCGTCATCGGGCTTATTCCTCTCCGGAGGAGGATGACTCATCGTCATCATCAGACCCAGTCACCAGATACATCAGCCAGATG CTCATGGAAGAAAACATGGAGGACATGCCGTACCTCTGTTACGACCCTCTCGCCCTCCGCGCCACCGAGATGTCCCTCTACAACGTCATCTCCGGACAGC CCTTCGATCTCGACGTTTCTGATTACCCTGCTCCGGAGCAGGGAAATGAAAATTCCCCCGTTCCGGATCCGGACTACTACTGGGATACTGTCAGTAACGG GGTGGGGAAGGGTTCTTCTTCGTTCGAGGACATGGTGAAGAATATGTTCAGCAACGAGGATTCGGTGTTGCAGTTCAACAGAGGGCTGGAGGAAGCTAAG AAGTTCCTCCCAAGTGCTCCGAATCTCGTCCTTGCCGATTTGGGTGGGAAAAATGTCGCAGATGTTCAAAAAAGGTCGCGGAATCAGGAGCGAGGGATGT TGGAGTTGGAGGAGGAACCGATGAGCAGAAAGCAGTCTGCGGTTAGTTACGAGGAAGAAGGGGAACTATCGGAGATGTTCGATAAGGTACTGCTTTTGCC GGAAGGGTTAACAATGTGTGCCGCCATGGATCGACATAACCCGAACTACTGCAACGACGATACAACTACTGCTGGTGCTAAGCCGGCCGATGAGAAGTCG GCTAACAATGGAGGTCGGAAGAAGCAGGGGAAGACAAAGGCAAAGAAAAACAGCAGCAACAAGAATGAAACAGCGGATTTGAGAGGGTTGCTCGTGCTGT GCGCGCAGGCGGTTTCGTCGAGCGATTTCAGGACGGCGAACGAGCTGCTGAAGCAAGTAAGGCAGCATTCTTCGGAGACCGGCGACGGAACTCAGAGGCT GGCGCATTACTTCGCCAACGGACTCGAAGCTCGTCTCGCAGGAAACAGTTCCGCGATGGCGCCCAATTTCTCCTACTCAATGGCTTCCGTGAGAATCTCG GCCGCCGAGATCCTGAAAGCGTACATGACGCACCTCAATTCGTGCCCGTTCAAGAAGATGTCCATCCTCTTCACCAACAAGATGATCTACGAGACGGCGG TGGACGCCAAGACGCTCCACGTCATCGATTTTGGAGTGATGTTCGGGTTCCAGTGGCCGATTTTGATACAGTTGTTAGCGATGAGGCCCGGCGGTCCTCC CAAGTTGAGGATCACGGGCGTCGAGCTCCCTCAGCGGGGGTTCCGCCCCACGGAGAGGATAGAAGAGGCAGGGCGCCGCCTGGCCAGGTATTGCAAAAGG TTTGGTGTGCCGTTCGAGTACAACCCGATCGCTTCCCATAACTGGGAGACGATCGGACTGGAGGAGTTCAAAATCAGGAAAGGAGAGGTCGTGGCGGTCA ATTGTCTGGGCAGGTTCAAGAACTTGATGGAGGAATCCTTCGATTCGAACTCACCACGGAACGCTGTGCTAAGTCTGATTCGGAAGATGAACCCCGACAT CTTCGTGCAGACGGAGACCAACGGGGCGTACAATGCCCCGTTCTTCGTGACGCGGTTTAGGGAGGCGCTTTTCCATTTCTCCTCGTTGTTCGACATGTTC GAGTGTGTTTTGGACGGCAAGGAGGAGAAGGAGAGGATGATGTTCGAGAGGGAGATTTACGGGAGGGAGGCGATGAATGCGGTGGCCGCGGAAGGAGCAG AGAGGGTCGAGCGGCCCGAGACATATAAGCAGTGGCAGGTTCGGAATGTGCGGGCCGGGTTTCGAGGGTTGCCGTTGAAGAAGGAGTTGATGGAGAAAGT TAGGAGTAAGATGAAGCTTTGGTACCATAAGGATTTTGATGTGGACCAAGATGGTTGTTGGATGTTGCAAGGTTGGAAAGGCAGGATCATCTTTGCGACG TCGTGTTGGGTTCCTGCTTGA
AA sequence Show only first row Show all	>Lus10001577 pacid=23154569 polypeptide=Lus10001577 locus=Lus10001577.g ID=Lus10001577.BGIv1.0 annot-version=v1.0 MDPNNPEFSIYDLQFSNSFNPPEDLDLAFTFSPGGESFIFSSTDDSPVSDPSPTTSSGWNHPDSSEQRNQPIHRHRAYSSPEEDDSSSSSDPVTRYISQM LMEENMEDMPYLCYDPLALRATEMSLYNVISGQPFDLDVSDYPAPEQGNENSPVPDPDYYWDTVSNGVGKGSSSFEDMVKNMFSNEDSVLQFNRGLEEAK KFLPSAPNLVLADLGGKNVADVQKRSRNQERGMLELEEEPMSRKQSAVSYEEEGELSEMFDKVLLLPEGLTMCAAMDRHNPNYCNDDTTTAGAKPADEKS ANNGGRKKQGKTKAKKNSSNKNETADLRGLLVLCAQAVSSSDFRTANELLKQVRQHSSETGDGTQRLAHYFANGLEARLAGNSSAMAPNFSYSMASVRIS AAEILKAYMTHLNSCPFKKMSILFTNKMIYETAVDAKTLHVIDFGVMFGFQWPILIQLLAMRPGGPPKLRITGVELPQRGFRPTERIEEAGRRLARYCKR FGVPFEYNPIASHNWETIGLEEFKIRKGEVVAVNCLGRFKNLMEESFDSNSPRNAVLSLIRKMNPDIFVQTETNGAYNAPFFVTRFREALFHFSSLFDMF ECVLDGKEEKERMMFEREIYGREAMNAVAAEGAERVERPETYKQWQVRNVRAGFRGLPLKKELMEKVRSKMKLWYHKDFDVDQDGCWMLQGWKGRIIFAT SCWVPA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Lus10001577 [exp]	0	1
AT1G65520		PEC11, ECHIC, A...	"delta\(3\), delta\(2\)-enoyl ...		Lus10001701 [exp]	24.3	0.8884
					Lus10015401 [exp]	25.5	0.8867
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Lus10001491 [exp]	28.4	0.8966
AT1G60710		ATB2	NAD(P)-linked oxidoreductase s...		Lus10041272 [exp]	28.8	0.8642
AT3G05200		ATL6	RING/U-box superfamily protein...		Lus10029949 [exp]	29.0	0.8950
AT4G11600		LSC803, PHGPX, ...	glutathione peroxidase 6 (.1)		Lus10008537 [exp]	31.5	0.8725
AT4G04960			Concanavalin A-like lectin pro...		Lus10018602 [exp]	31.7	0.8897
					Lus10018014 [exp]	36.9	0.8900
AT2G02870			Galactose oxidase/kelch repeat...		Lus10012841 [exp]	37.5	0.8654
AT2G18210			unknown protein		Lus10041771 [exp]	38.0	0.8954

Compare expression of checked genes

Lus10001577 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.