Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21120 829 / 0 CAT1, AAT1 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) AT2G34960 623 / 0 CAT5 cationic amino acid transporter 5 (.1) AT1G17120 552 / 0 CAT8 cationic amino acid transporter 8 (.1) AT5G04770 434 / 5e-143 CAT6, ATCAT6 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1) AT3G10600 432 / 3e-142 CAT7 cationic amino acid transporter 7 (.1) AT5G36940 229 / 2e-65 CAT3 cationic amino acid transporter 3 (.1) AT3G03720 226 / 3e-64 CAT4 cationic amino acid transporter 4 (.1.2) AT1G58030 219 / 2e-61 CAT2 cationic amino acid transporter 2 (.1) AT1G05940 186 / 2e-50 CAT9 cationic amino acid transporter 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023271 [exp] 897 / 0 AT4G21120 902 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Lus10042817 [exp] 632 / 0 AT4G21120 731 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Lus10005574 [exp] 579 / 0 AT1G17120 811 / 0.0 cationic amino acid transporter 8 (.1) Lus10003697 [exp] 407 / 2e-133 AT4G21120 416 / 2e-140 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Lus10000962 [exp] 389 / 4e-125 AT5G04770 543 / 0.0 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1) Lus10040142 [exp] 387 / 2e-124 AT5G04770 547 / 0.0 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1) Lus10005671 [exp] 232 / 7e-66 AT1G58030 958 / 0.0 cationic amino acid transporter 2 (.1) Lus10020320 [exp] 231 / 7e-66 AT1G58030 912 / 0.0 cationic amino acid transporter 2 (.1) Lus10029003 [exp] 231 / 8e-66 AT3G49030 57 / 3e-08 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G133100 [exp] 875 / 0 AT4G21120 845 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.012G131300 [exp] 873 / 0 AT4G21120 848 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.013G030900 [exp] 837 / 0 AT4G21120 833 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.013G030833 [exp] 837 / 0 AT4G21120 833 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.003G154600 [exp] 634 / 0 AT2G34960 870 / 0.0 cationic amino acid transporter 5 (.1) Potri.001G378500 [exp] 582 / 0 AT1G17120 785 / 0.0 cationic amino acid transporter 8 (.1) Potri.008G017100 [exp] 424 / 8e-139 AT3G10600 778 / 0.0 cationic amino acid transporter 7 (.1) Potri.010G241000 [exp] 409 / 5e-133 AT3G10600 781 / 0.0 cationic amino acid transporter 7 (.1) Potri.003G083700 [exp] 399 / 1e-129 AT5G04770 509 / 7e-176 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1) Potri.001G150700 [exp] 396 / 3e-128 AT5G04770 519 / 2e-179 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF00324 [flax] [poplar] AA_permease Amino acid permease
Representative CDS sequence Show only first row Show all	>Lus10001581 pacid=23169285 polypeptide=Lus10001581 locus=Lus10001581.g ID=Lus10001581.BGIv1.0 annot-version=v1.0 ATGGCTGTCGACGACGGAGGAGAAACCAAATCAAACAGAGACGGAGGATGCTTCTGCCGGAAGAAGGACTTCCTGCCAGAGGAGTCGTTCCAGAGCTGGT CGAACTACGGCCGGGCGCTCAAGGAAACGCCCAAACGGTTTGTGGACCGGGTCATGGCCCGGTCCATGGACGACACGGAACTCCACGAAGTCAAGGCCCG GAGCGAGCACGAGATGAAGAAGACCCTCAACTGGTGGGACCTCATGTGGTTCGGGATCGGCGCCGTCATTGGCGCCGGAATCTTCGTGCTCACGGGCCTC GAGGCGCGCGACCATGCCGGCCCCGCCGTCGTGCTATCCTATGTCGTGTCGGGTGTTTCGGCTATGCTTTCCGTTTTCTGTTATACGGAGTTCGCCGTTG AGATTCCCGTTGCAGGTGGCTCATTCGCATACTTAAGAGTAGAGCTCGGAGACTTCGTCGCCTTCATTGCCGCCGGCAACATCCTCCTCGAGTACGTAAT CGGCGGCGCCGCCGTCTCCCGCTCATGGACATCCTACTTCGCCACCCTCTGCAACTACAAGCCCGACGACTTCCGCATCATAGCCCACTCCCTTCCGGAC GACTACAGCCACCTGGACCCGATCGCCGTCGCCGTCGCCGCCATAGTCTGCATCCTCGCCGTCCTGAGCACAAAGGGCTCCTCCCGCTTCAACTACATCG CCTCTATATTCCACGTGGCGGTCATCCTCTTTATCATCGTGGCCGGGTTCACCAAAGCCGACTCGAAAAACTTGACCCCGTTCAACCCGCATGGCGCTCG GGGCATTTTCGTCTCTTCAGCCGTTTTGTTCTTCGCCTACGTCGGTTTCGACGCCGTTTCGACCATGGCCGAGGAGACTAAAGACCCGGCTAGGGATATT CCGATCGGGCTTGTGGGGTCAATGACGGTGACCACGGTGGCTTACTGTTTGCTGGCGATTGTTCTATGTATGATGGTACCGTATAAGGAGATCGACCCTG ACGCGCCTTTCTCGGTCGCGTTCTCAGCCGTTGGATGGGATTGGGCTAAGTACATCGTGGCCGCTGGTGCGCTTAAGGGAATGACCACTGTTTTGCTTGT TTCCGCCGTGGGGCAGGCTCGGTATTTGACTCACATTGCTAGGACCCACATGATGCCACCGTGGCTCGCTCAAGTCAACTCCCGGACGGGGACCCCGGTC AACGCGACGGTCGTCATGCTGACAGCAACCGCGTTCATCGCCTTCTTCACCAAGCTCGACATACTCTCGAACCTCCTCTCGATCTCCACGTTGTTCATCT TCATGATGGTGGCCTTGGCGCTCTTGGTACGTCGTTACTACGTATCGGGAGTGACCACCAAGGGCAACCAACTGAAATTGATCGGATGCATCACGACCAT TCTAGGGTCTGCGATCGCCACTGCAGTCTTGTGGGGGCTAGGAGGAGACGGGTGGGTTGGTTACGTCATAACAGTTCCGATATGGTTTTTGGCCACCTTG GCGTTATGGGCTACGGTACCCCAGGCCAGGGAGCCGAAGTTGTGGGGGGTCCCGCTCGTGCCATGGCTGCCGTCGGCTTCCATAATGATAAACATGTTCC TGTTGGGATCGATTGATACGGCATCGTTTGCGAGGTTCGGAGCTTGGACCGGTCTTTTGTTGGTTTATTACTTCTTGTTCGGAATGCACGCGACTTATGA CATTGCTAAGGAGACCGAGCTCGAAAAGAAGAAGAAGGTGGTCGAGGCCAGAAAGATAGAAGAAGGAGGAGATCAAGGGAAACTCCAGCTCAGCTTAGCT CCTCTCCTCGAGACTCTTCACTACCAAGGCCAATGTGTGCACCTAGATGTAGTAGCTTCGGCTCCAAGTGTAAAATTCGTAGAGTTTAGACTCGATAATC TTGGTACCGAGGAGGAGGGAAGAATTGCTGAACTGATTCCCAAGTTCCCGCATCTAGAATCTCTCCACTTGACAGCAGGACAATATAAGCGAAAGCTAAG GATATCAGCTCATACACTTCGGGAACTAACTCTCGCAGACCTATCTCACAAGGCGCTAGCGTTCGAGATTGATGCTCCTAATCTTGTAACGCTAACCTTT GGCGCCGCCACTTGGCCCAAAATCAAATGGAATGTTGTCAACGTGCCTCCTAGATGTCATTGTGTGTTTGCTTGTTATGATGATCGTTGCAGTATAACAA CAAACTGGTTAACTGAGCTGAGAAAGTGTCTAGCCGCACCAGTTGCTCGTTTCCACCACCTGGTTTTCAAGTTGAATTTCCAGTGGCCAGTACAGAGCAA GGCTCATGAAGCTCAAATTTTCGATGCCGTCTTAACGGCATTTCATCCAAAGAAATTATCCGTAGCTCAATCAAGTGACAACATGAGCTTAATCTCGTAC GTCACTAAGCAAATTGAGAGGGCTAATCTCGAGAAATGTGGTGGCGGCACCGGCTTAAAATGCAGAGCTAACAAGCGTAACCGTGGATGA
AA sequence Show only first row Show all	>Lus10001581 pacid=23169285 polypeptide=Lus10001581 locus=Lus10001581.g ID=Lus10001581.BGIv1.0 annot-version=v1.0 MAVDDGGETKSNRDGGCFCRKKDFLPEESFQSWSNYGRALKETPKRFVDRVMARSMDDTELHEVKARSEHEMKKTLNWWDLMWFGIGAVIGAGIFVLTGL EARDHAGPAVVLSYVVSGVSAMLSVFCYTEFAVEIPVAGGSFAYLRVELGDFVAFIAAGNILLEYVIGGAAVSRSWTSYFATLCNYKPDDFRIIAHSLPD DYSHLDPIAVAVAAIVCILAVLSTKGSSRFNYIASIFHVAVILFIIVAGFTKADSKNLTPFNPHGARGIFVSSAVLFFAYVGFDAVSTMAEETKDPARDI PIGLVGSMTVTTVAYCLLAIVLCMMVPYKEIDPDAPFSVAFSAVGWDWAKYIVAAGALKGMTTVLLVSAVGQARYLTHIARTHMMPPWLAQVNSRTGTPV NATVVMLTATAFIAFFTKLDILSNLLSISTLFIFMMVALALLVRRYYVSGVTTKGNQLKLIGCITTILGSAIATAVLWGLGGDGWVGYVITVPIWFLATL ALWATVPQAREPKLWGVPLVPWLPSASIMINMFLLGSIDTASFARFGAWTGLLLVYYFLFGMHATYDIAKETELEKKKKVVEARKIEEGGDQGKLQLSLA PLLETLHYQGQCVHLDVVASAPSVKFVEFRLDNLGTEEEGRIAELIPKFPHLESLHLTAGQYKRKLRISAHTLRELTLADLSHKALAFEIDAPNLVTLTF GAATWPKIKWNVVNVPPRCHCVFACYDDRCSITTNWLTELRKCLAAPVARFHHLVFKLNFQWPVQSKAHEAQIFDAVLTAFHPKKLSVAQSSDNMSLISY VTKQIERANLEKCGGGTGLKCRANKRNRG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21120		CAT1, AAT1	CATIONIC AMINO ACID TRANSPORTE...		Lus10001581 [exp]	0	1
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10042339 [exp]	1.0	0.8717
AT1G54215			proline-rich family protein (....		Lus10015652 [exp]	1.7	0.8433
AT5G59050			unknown protein		Lus10001433 [exp]	2.4	0.8537
AT5G04830			Nuclear transport factor 2 (NT...		Lus10028847 [exp]	3.5	0.7959
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Lus10013579 [exp]	4.0	0.8337
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10018595 [exp]	4.2	0.8151
AT2G42750			DNAJ heat shock N-terminal dom...		Lus10020749 [exp]	4.9	0.8132
AT4G23990		ATCSLG3	ARABIDOPSIS THALIANA CELLULOSE...		Lus10023057 [exp]	6.2	0.7954
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Lus10004260 [exp]	7.1	0.8047
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10008795 [exp]	8.1	0.8156

Compare expression of checked genes

Lus10001581 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.