Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11590 141 / 1e-41 AP2_ERF DREB3, TINY2 TINY2, Integrase-type DNA-binding superfamily protein (.1) AT5G25810 135 / 2e-39 AP2_ERF TNY, TINY TINY, Integrase-type DNA-binding superfamily protein (.1) AT4G32800 134 / 4e-39 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G44940 125 / 4e-35 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT3G16280 120 / 2e-33 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G25820 119 / 2e-33 AP2_ERF ESE2 ethylene and salt inducible 2, Integrase-type DNA-binding superfamily protein (.1) AT4G16750 117 / 3e-33 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT3G60490 119 / 5e-33 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G35700 115 / 6e-32 AP2_ERF ATERF38 ERF family protein 38 (.1) AT5G51990 107 / 7e-29 AP2_ERF CBF4, DREB1D DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002801 [exp] 182 / 1e-57 AT5G11590 209 / 4e-68 TINY2, Integrase-type DNA-binding superfamily protein (.1) Lus10034949 [exp] 134 / 7e-38 AT4G32800 169 / 3e-51 Integrase-type DNA-binding superfamily protein (.1) Lus10043240 [exp] 128 / 2e-36 AT5G11590 176 / 1e-54 TINY2, Integrase-type DNA-binding superfamily protein (.1) Lus10011123 [exp] 119 / 7e-34 AT5G11590 143 / 6e-43 TINY2, Integrase-type DNA-binding superfamily protein (.1) Lus10038270 [exp] 119 / 4e-33 AT5G11590 168 / 4e-52 TINY2, Integrase-type DNA-binding superfamily protein (.1) Lus10025834 [exp] 118 / 1e-32 AT5G11590 164 / 2e-50 TINY2, Integrase-type DNA-binding superfamily protein (.1) Lus10038607 [exp] 112 / 7e-31 AT5G11590 168 / 1e-52 TINY2, Integrase-type DNA-binding superfamily protein (.1) Lus10007799 [exp] 108 / 4e-30 AT2G44940 136 / 7e-42 Integrase-type DNA-binding superfamily protein (.1) Lus10027412 [exp] 110 / 6e-30 AT5G51990 239 / 3e-80 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G043900 [exp] 151 / 2e-45 AT5G11590 212 / 5e-69 TINY2, Integrase-type DNA-binding superfamily protein (.1) Potri.003G050700 [exp] 130 / 1e-37 AT5G11590 166 / 5e-51 TINY2, Integrase-type DNA-binding superfamily protein (.1) Potri.001G187500 [exp] 129 / 5e-37 AT5G25810 157 / 9e-48 TINY, Integrase-type DNA-binding superfamily protein (.1) Potri.001G155700 [exp] 125 / 1e-35 AT2G44940 159 / 1e-47 Integrase-type DNA-binding superfamily protein (.1) Potri.006G163400 [exp] 126 / 2e-35 AT4G32800 159 / 6e-48 Integrase-type DNA-binding superfamily protein (.1) Potri.006G238600 [exp] 125 / 2e-35 AT5G11590 199 / 8e-64 TINY2, Integrase-type DNA-binding superfamily protein (.1) Potri.003G079300 [exp] 124 / 4e-35 AT4G16750 150 / 7e-46 Integrase-type DNA-binding superfamily protein (.1) Potri.018G085700 [exp] 125 / 5e-35 AT4G32800 155 / 4e-46 Integrase-type DNA-binding superfamily protein (.1) Potri.014G055700 [exp] 125 / 5e-35 AT2G44940 206 / 2e-65 Integrase-type DNA-binding superfamily protein (.1) Potri.002G141200 [exp] 124 / 1e-34 AT2G44940 158 / 6e-47 Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10001601 pacid=23158696 polypeptide=Lus10001601 locus=Lus10001601.g ID=Lus10001601.BGIv1.0 annot-version=v1.0 ATGACGCAACTAGCACGAAATTCAGAGCAGGAAAGCAGCTGCAACTCATTCTCATCCTCACCCCCGCCTTCTCCTTCAACAATTACAAATTCCAACAACA ATAATAAGAAGATAAAGAGAATACGGGACGACGCCAACAAGCATCCGCTGTACCGAGGGGTGCGAATGCGGAGTTGGGGGAAATGGGTGTCCGAAATCAG GGAGCCCCGCAAGAAATCCAGAATTTGGCTCGGTACTTTCCCTACACCTGAAATGGCTGCTCGAGCACACGACGTGGCAGCTCTCAGCATCAAGGGTGAC TCAGCAATTCTCAATTTCCCAGATATAGCCACCCCCACACCCCCCCCCTCCCCCCCCCCCCCTCCCCCCCCCCCGCGGAATCTCCAAGCCGCAGCTACCA AGGCCGCCCAGATGGATCAATTCGACGCCAAACAGCTTGAAAACCGCACCGCCGCCGCCGCCACAACCACCACCACCACCACCAGAACTTCCTCCACATC TTCATCATCCAGCTCTTCACTGTCATCTATGGTCTCGTCGATGGAATTGACCGAGGCGGAGGAGGAGGGATTATGCGAGATTATAGAGCTGCCCAGTTTG GACCATTTTGGTGAGTTGGAAAGTGAGTTGGTGAGTCCGGGTTAG
AA sequence Show only first row Show all	>Lus10001601 pacid=23158696 polypeptide=Lus10001601 locus=Lus10001601.g ID=Lus10001601.BGIv1.0 annot-version=v1.0 MTQLARNSEQESSCNSFSSSPPPSPSTITNSNNNNKKIKRIRDDANKHPLYRGVRMRSWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGD SAILNFPDIATPTPPPSPPPPPPPPRNLQAAATKAAQMDQFDAKQLENRTAAAATTTTTTTRTSSTSSSSSSSLSSMVSSMELTEAEEEGLCEIIELPSL DHFGELESELVSPG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11590	AP2_ERF	DREB3, TINY2	TINY2, Integrase-type DNA-bind...		Lus10001601 [exp]	0	1
AT5G56590			O-Glycosyl hydrolases family 1...		Lus10034987 [exp]	3.2	0.8415
AT5G05830			RING/FYVE/PHD zinc finger supe...		Lus10040240 [exp]	5.7	0.7633
AT2G03050		SOLDAT10, EMB93	SINGLET OXYGEN-LINKED DEATH AC...		Lus10030451 [exp]	12.2	0.8183
AT3G49170		EMB2261	embryo defective 2261, Tetratr...		Lus10004253 [exp]	12.2	0.8057
AT2G47230		ATDUF6	DOMAIN OF UNKNOWN FUNCTION 724...		Lus10010060 [exp]	16.5	0.7939
AT2G37560		ATORC2	origin recognition complex sec...		Lus10024412 [exp]	24.2	0.7891
AT1G49970		SVR2, NCLPP5, C...	SUPPRESSOR OF VARIEGATION 2, N...		Lus10003953 [exp]	31.8	0.7916
AT1G49970		SVR2, NCLPP5, C...	SUPPRESSOR OF VARIEGATION 2, N...		Lus10020990 [exp]	31.9	0.8035
AT2G05760			Xanthine/uracil permease famil...		Lus10035311 [exp]	33.5	0.8011
AT3G27180			S-adenosyl-L-methionine-depend...		Lus10012527 [exp]	40.4	0.7967

Compare expression of checked genes

Lus10001601 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.