Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05530 174 / 9e-56 SDRA, IBR1 SHORT-CHAIN DEHYDROGENASE/REDUCTASE A, indole-3-butyric acid response 1 (.1) AT1G54870 65 / 3e-13 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47130 63 / 9e-13 AtSDR3 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G51680 62 / 4e-12 AtSDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29250 61 / 7e-12 AtSDR4 short-chain dehydrogenase reductase 4, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT3G29260 61 / 9e-12 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47140 59 / 3e-11 AtSDR5 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47120 58 / 1e-10 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G06060 54 / 3e-09 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G07440 53 / 4e-09 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001430 [exp] 238 / 2e-80 AT4G05530 369 / 2e-130 SHORT-CHAIN DEHYDROGENASE/REDUCTASE A, indole-3-butyric acid response 1 (.1) Lus10020019 [exp] 220 / 1e-73 AT4G05530 395 / 5e-141 SHORT-CHAIN DEHYDROGENASE/REDUCTASE A, indole-3-butyric acid response 1 (.1) Lus10015542 [exp] 202 / 3e-66 AT4G05530 385 / 2e-136 SHORT-CHAIN DEHYDROGENASE/REDUCTASE A, indole-3-butyric acid response 1 (.1) Lus10040731 [exp] 70 / 3e-15 AT5G06060 308 / 5e-106 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026419 [exp] 69 / 1e-14 AT3G51680 367 / 9e-128 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016997 [exp] 67 / 3e-14 AT1G52340 249 / 2e-82 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016499 [exp] 67 / 4e-14 AT5G06060 337 / 2e-117 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021320 [exp] 67 / 6e-14 AT1G52340 246 / 2e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10029438 [exp] 65 / 4e-13 AT3G51680 396 / 3e-139 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G022500 [exp] 187 / 1e-60 AT4G05530 373 / 5e-132 SHORT-CHAIN DEHYDROGENASE/REDUCTASE A, indole-3-butyric acid response 1 (.1) Potri.011G022400 [exp] 182 / 8e-59 AT4G05530 330 / 4e-115 SHORT-CHAIN DEHYDROGENASE/REDUCTASE A, indole-3-butyric acid response 1 (.1) Potri.006G105900 [exp] 67 / 5e-14 AT3G51680 412 / 4e-146 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.019G125600 [exp] 65 / 3e-13 AT3G51680 394 / 8e-139 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.010G092400 [exp] 63 / 7e-13 AT1G54870 301 / 3e-103 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G129100 [exp] 64 / 1e-12 AT3G51680 383 / 3e-134 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206900 [exp] 63 / 2e-12 AT2G47140 229 / 3e-75 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G074000 [exp] 61 / 7e-12 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.019G023900 [exp] 59 / 2e-11 AT1G54870 172 / 1e-52 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G089800 [exp] 59 / 3e-11 AT2G29150 307 / 2e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10001636 pacid=23145995 polypeptide=Lus10001636 locus=Lus10001636.g ID=Lus10001636.BGIv1.0 annot-version=v1.0 ATGCAGCATAACGTGGACGAGGCAGTGAAGAAGCTGAGAGAAGAGGGAATCCAACAAGTGGTGGGTGTTGTTTGCCATGTCTCTAATCCACAACAGAGGA AGACTCTCATTGACAAAACTGTTGAGAAATATGGGAAAATAGATGTGCTCGTATCGAATGCAGCTGCGAACCCATCATCGGAGTCCATCTTGGACGAGGA GGAATCCGTCCTCGACAAGCTGTGGGAAGTGAACGTCAAGTCATCCATCGTTCTCTTGAAGAATGCAGCTCCATACATGAAAAGGGGTTCTTGCGTTGTT CTGGTTGCAACCGTTGCTGGCTACGACCCGCCTGCTTCGGCGGCTATGTATGGTGTCACAAAAACCGCCCTTCTCGGCCTCACGACTCAGATGGCTTGTA CCTAG
AA sequence Show only first row Show all	>Lus10001636 pacid=23145995 polypeptide=Lus10001636 locus=Lus10001636.g ID=Lus10001636.BGIv1.0 annot-version=v1.0 MQHNVDEAVKKLREEGIQQVVGVVCHVSNPQQRKTLIDKTVEKYGKIDVLVSNAAANPSSESILDEEESVLDKLWEVNVKSSIVLLKNAAPYMKRGSCVV LVATVAGYDPPASAAMYGVTKTALLGLTTQMACT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G05530		SDRA, IBR1	SHORT-CHAIN DEHYDROGENASE/REDU...		Lus10001636 [exp]	0	1

Compare expression of checked genes

Lus10001636 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.