Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79430 278 / 6e-90 GARP WDY, APL WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) AT3G12730 220 / 2e-69 GARP Homeodomain-like superfamily protein (.1) AT3G24120 210 / 9e-65 GARP Homeodomain-like superfamily protein (.1.2) AT4G13640 210 / 1e-64 GARP UNE16 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) AT5G18240 184 / 1e-53 GARP MYR1, ATMYR1 ARABIDOPSIS MYB-RELATED PROTEIN 1, myb-related protein 1 (.1.2.3.4.5) AT3G04030 183 / 4e-53 GARP Homeodomain-like superfamily protein (.1.2.3) AT1G69580 164 / 8e-47 GARP Homeodomain-like superfamily protein (.1.2) AT2G01060 160 / 1e-45 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT5G45580 150 / 4e-42 GARP Homeodomain-like superfamily protein (.1) AT4G28610 132 / 3e-34 GARP ATPHR1, PHR1 phosphate starvation response 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001844 [exp] 471 / 3e-164 AT1G79430 286 / 3e-93 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Lus10016676 [exp] 203 / 1e-61 AT4G13640 380 / 2e-133 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Lus10007132 [exp] 203 / 2e-61 AT4G13640 390 / 3e-137 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Lus10020264 [exp] 188 / 9e-55 AT3G04030 441 / 4e-154 Homeodomain-like superfamily protein (.1.2.3) Lus10002629 [exp] 187 / 2e-54 AT3G04030 440 / 9e-154 Homeodomain-like superfamily protein (.1.2.3) Lus10037169 [exp] 172 / 6e-50 AT1G69580 252 / 9e-83 Homeodomain-like superfamily protein (.1.2) Lus10036758 [exp] 167 / 2e-48 AT1G69580 258 / 9e-85 Homeodomain-like superfamily protein (.1.2) Lus10010404 [exp] 165 / 2e-47 AT5G45580 216 / 9e-70 Homeodomain-like superfamily protein (.1) Lus10012142 [exp] 163 / 8e-47 AT5G45580 215 / 2e-69 Homeodomain-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G081800 [exp] 300 / 1e-98 AT1G79430 335 / 6e-114 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Potri.010G174100 [exp] 280 / 4e-91 AT1G79430 356 / 4e-122 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Potri.017G054800 [exp] 214 / 3e-66 AT4G13640 338 / 6e-117 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Potri.001G314800 [exp] 213 / 9e-66 AT4G13640 345 / 2e-119 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Potri.011G023600 [exp] 189 / 4e-57 AT1G79430 180 / 1e-54 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Potri.019G032700 [exp] 181 / 3e-52 AT3G04030 449 / 2e-157 Homeodomain-like superfamily protein (.1.2.3) Potri.013G060200 [exp] 181 / 5e-52 AT3G04030 462 / 3e-162 Homeodomain-like superfamily protein (.1.2.3) Potri.008G087600 [exp] 170 / 4e-49 AT1G69580 276 / 2e-91 Homeodomain-like superfamily protein (.1.2) Potri.010G167901 [exp] 167 / 6e-48 AT1G69580 262 / 5e-86 Homeodomain-like superfamily protein (.1.2) Potri.001G133400 [exp] 165 / 1e-47 AT5G45580 220 / 2e-71 Homeodomain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10001754 pacid=23159134 polypeptide=Lus10001754 locus=Lus10001754.g ID=Lus10001754.BGIv1.0 annot-version=v1.0 ATGTTCCATGGCCATGTGAAGAAACCCTCGACGACGATAACAACAGCATCCGGCGGTCATCATCATAATCATAATAATAATAATAATAACAGCGGTGGTA GCGGCGGGATGATGATAAATTCGCATCACAGCCATCATCAGCACCAACATCATCACCATCAACAACAACAACATCACCATGATAGGAATACTGGAGGTGG CGGCGGGATGTCATCGTCGTCGTCAGGGTGTCATGTACAGCAAGGAGACTCGGGACTTGTTCTCACTACTGACCCTAAGCCTCGTCTCCGGTGGACAGTT GAGCTTCACGAGCGCTTCGTCGATGCTGTCACCCAGCTCGGCGGCCCCGACAAGGCGACTCCCAAGACAATCATGAGAGTCATGGGGGTGAAGGGTCTTA CCCTTTATCACCTCAAGAGCCATCTTCAGAAATTTAGGCTTGGGAAGCAGCCTCACAAGGAGCTCAATGATCACTCTCTTAAGGATGCAGCTTCGGCCTT AGATCTTCAGCGAAACTTGCCTTCTTCTTCTGGCATGATGGGTCGCAGTATGAACGAGATGCAAATGGAAGTCCAGAGACGACTGCATGAACAATTGGAG GTACAAAGACATCTGCAGTTGAGGATAGAAGCTCAAGGAAAGTACATGCAAAGCATGCTGGAGAAAGCCTGTCAGACTCTTGCGGCGGGCGAACAACAAC ATCACACCTACAGTAGCAGTACTACTAGTAACCCCAACAACAGCAGCAGCAAAGTAGCATCAGATCATCACCACCACCATAACCCTCATCACGGCATGCA TAACAGCAGTAGCGTGGAGCATCTAGTGGGAATGAAAGACATGGCCGGACAAGCAGCGCTCAACTTCCCTCCTGTTCAGGACCTCAATATATACGGCAAC ATGGACCACGGGTTGATGATGTCATCATCTTCCAACAATAATAATAATAGTAACAATATTAACCACGACGGTGCTGCACTCTGCCTTGGATCCAACAACA GCAACAGTAATAATAAGAAGCGTCCTAATCCTTATAATACCACTGCTAGTACAATTACGAAGAGCTCGTTGATGTGGTCGTCAGACGATCTCCGGTTGCA AGAAGGCATTAACGGGGGAACCGATGAGGATGAGGATGATGGTGATCATCATGAAGATAATGATCAGTTACAGATTCATATGGATCAGCAGCATTTGCAG GATTCGCATATATTGTACGATTCCAAGCAGCTAATAGGAGGAGAACATGGGTTGATGTTGATGGGTCCTAGTCCAACTGATCATCGTCAGCAGCATCATA GCCAGCTTCCTCATCAGCTCCTTACTAAGTCCAAGTTTGATCATCACGCCGGTAATTAG
AA sequence Show only first row Show all	>Lus10001754 pacid=23159134 polypeptide=Lus10001754 locus=Lus10001754.g ID=Lus10001754.BGIv1.0 annot-version=v1.0 MFHGHVKKPSTTITTASGGHHHNHNNNNNNSGGSGGMMINSHHSHHQHQHHHHQQQQHHHDRNTGGGGGMSSSSSGCHVQQGDSGLVLTTDPKPRLRWTV ELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKELNDHSLKDAASALDLQRNLPSSSGMMGRSMNEMQMEVQRRLHEQLE VQRHLQLRIEAQGKYMQSMLEKACQTLAAGEQQHHTYSSSTTSNPNNSSSKVASDHHHHHNPHHGMHNSSSVEHLVGMKDMAGQAALNFPPVQDLNIYGN MDHGLMMSSSSNNNNNSNNINHDGAALCLGSNNSNSNNKKRPNPYNTTASTITKSSLMWSSDDLRLQEGINGGTDEDEDDGDHHEDNDQLQIHMDQQHLQ DSHILYDSKQLIGGEHGLMLMGPSPTDHRQQHHSQLPHQLLTKSKFDHHAGN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79430	GARP	WDY, APL	WOODY, ALTERED PHLOEM DEVELOPM...		Lus10001754 [exp]	0	1
AT1G79430	GARP	WDY, APL	WOODY, ALTERED PHLOEM DEVELOPM...		Lus10001844 [exp]	1.0	0.9722
AT1G80660		AHA9	H\(+\)-ATPase 9, H\(+\)-ATPase...		Lus10042445 [exp]	1.4	0.9612
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10022304 [exp]	3.9	0.9455
AT2G24520		AHA5	H\(+\)-ATPase 5, H\(+\)-ATPase...		Lus10026224 [exp]	4.9	0.9461
AT4G24250		ATMLO13, MLO13	MILDEW RESISTANCE LOCUS O 13, ...		Lus10042397 [exp]	4.9	0.9544
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10014580 [exp]	6.5	0.9375
AT5G49660		XIP1	XYLEM INTERMIXED WITH PHLOEM 1...		Lus10007233 [exp]	7.5	0.9303
AT5G36930			Disease resistance protein (TI...		Lus10007814 [exp]	8.9	0.9284
AT3G05620			Plant invertase/pectin methyle...		Lus10029868 [exp]	9.2	0.9443
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10032103 [exp]	9.4	0.9272

Compare expression of checked genes

Lus10001754 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.