Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41800 218 / 3e-66 Transmembrane amino acid transporter family protein (.1) AT1G08230 135 / 3e-35 ATGAT1 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) AT1G48640 61 / 8e-10 Transmembrane amino acid transporter family protein (.1) AT5G40780 57 / 1e-08 LHT1, LTH1 lysine histidine transporter 1 (.1.2) AT2G39890 56 / 3e-08 ATPROT1, ProT1 proline transporter 1 (.1.2) AT1G44100 50 / 1e-06 AAP5 amino acid permease 5 (.1) AT5G09220 50 / 1e-06 AAP2 amino acid permease 2 (.1) AT3G55740 47 / 1e-05 ATPROT2, ProT2 proline transporter 2 (.1.2) AT5G49630 46 / 4e-05 AAP6 amino acid permease 6 (.1) AT1G77380 45 / 8e-05 AAP3, ATAAP3 amino acid permease 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003903 [exp] 467 / 1e-163 AT5G41800 695 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10037914 [exp] 172 / 3e-49 AT1G08230 112 / 6e-31 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Lus10038640 [exp] 133 / 4e-35 AT1G08230 208 / 7e-63 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Lus10009386 [exp] 129 / 7e-33 AT1G08230 453 / 4e-157 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Lus10038639 [exp] 115 / 5e-28 AT1G08230 523 / 0.0 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Lus10037913 [exp] 104 / 2e-24 AT1G08230 305 / 9e-100 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Lus10028251 [exp] 62 / 4e-10 AT3G55740 676 / 0.0 proline transporter 2 (.1.2) Lus10020537 [exp] 60 / 2e-09 AT1G27170 404 / 6e-121 transmembrane receptors;ATP binding (.1.2) Lus10040238 [exp] 59 / 3e-09 AT3G55740 673 / 0.0 proline transporter 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G138100 [exp] 214 / 5e-65 AT5G41800 729 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.001G093600 [exp] 214 / 7e-65 AT5G41800 729 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.008G026600 [exp] 130 / 2e-33 AT1G08230 509 / 2e-179 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Potri.008G026700 [exp] 125 / 1e-31 AT1G08230 490 / 7e-172 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Potri.009G149900 [exp] 115 / 3e-28 AT1G08230 573 / 0.0 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Potri.005G219300 [exp] 97 / 6e-22 AT1G08230 226 / 7e-69 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Potri.010G055800 [exp] 52 / 5e-07 AT5G40780 670 / 0.0 lysine histidine transporter 1 (.1.2) Potri.007G100100 [exp] 52 / 6e-07 AT5G09220 768 / 0.0 amino acid permease 2 (.1) Potri.015G091600 [exp] 51 / 7e-07 AT5G40780 610 / 0.0 lysine histidine transporter 1 (.1.2) Potri.005G068900 [exp] 51 / 9e-07 AT5G09220 799 / 0.0 amino acid permease 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10001908 pacid=23157113 polypeptide=Lus10001908 locus=Lus10001908.g ID=Lus10001908.BGIv1.0 annot-version=v1.0 ATGGCGGAGCCTCCTAAGCCGGACGCCTTCCCGGCATCCTCCAGGGACAACGATGCCGGCGCCAATTTCGTCCTCGAATCCAAGGGTAGTCCCCCCCCAC GTTTCCTCTCCACTTTGATTCAATCAAATTTTCTCTACGATCCTGACGTTGCCATACGCTTTCAGGGGGATGGGATGGGTTTTAGGGATCTCGAGCTTGA CAGCCATGGGTTTCATCTCCTTCTACTCTTACTACCTGATGTCGCTGGTGCTCGACTTCTGCGAGAGAGACGGCCGCCGCCACATCCGTTTCCGGGAGCT CGCCGCCGACGTCTTGGACAACGGAATGATGACTTGGCTAGCAATCTTACGGAGAGGAGGAAGAGATCAGTGTATAGAAGCCACATGAAGTGGGGGTCTG GATGGATGTTTTACTTCGTAATATCAATACAAACAGTCATTAATACTGGGATCAGCATCGGCACCCTTCTTCTAGCTGGCGAATGCCTTCAGATAATGTA CTCGGAGCTGTCACCACATGGATCAATGAAGCTGTATGAGTTCATAGCAATAGTGACGGGAGTAATGGTAGTTCTGGCACAGATGCCGTCTTTCCACTCC CTCAGGCACATCAACTTGGCTTCTTTACTCCTCAGCTTTGGCTACACTTTCCTCGTTGTTGCTGCTTGCATCTATGCAGAGTCAGAAGACTCCCTCAGAG TCTTCAGTGCTTTCTCTTCAATTTCCACTATAGCTGCCATCTTTGGGAATGGCATCTTGCCTGAGATCCAGGCAACTCTTGCTCCACCGGCCACTGGCAA GATGCTGAAAGGGCTAGTGTATTCTCAAGTAGCATTTGAGGTGATGGAAAAGAAGTCAGCTGACACGAGTAAAGGGATGTTTTCGTTGAGGAACTTGATC CCTAGGATAATCCTTCGATCTCTTTACATGGCGTCCTGCGGGTTTGTGGTAGCGATGCTTCCTTTTTTCAGAGACATAAATGGGATAGTTGGAGCACTTG GGTTCATTCCTCTGGATTTCATCCTCCCAATGCTCCTCTATAACATGACTTACAGACCTTCCAAATCCTCTGGCACGTATTGGATCAATATGGTCATTAT GGTAGTGTTTTCAGGGGTAGGTATTTTGGGGGCTTTCGCTTCTATTAGAAAGCTTGTCCTTGATGCTCACAGGTTTAAACTTTTCAGTAGTGATGTAGTT GATTGA
AA sequence Show only first row Show all	>Lus10001908 pacid=23157113 polypeptide=Lus10001908 locus=Lus10001908.g ID=Lus10001908.BGIv1.0 annot-version=v1.0 MAEPPKPDAFPASSRDNDAGANFVLESKGSPPPRFLSTLIQSNFLYDPDVAIRFQGDGMGFRDLELDSHGFHLLLLLLPDVAGARLLRERRPPPHPFPGA RRRRLGQRNDDLASNLTERRKRSVYRSHMKWGSGWMFYFVISIQTVINTGISIGTLLLAGECLQIMYSELSPHGSMKLYEFIAIVTGVMVVLAQMPSFHS LRHINLASLLLSFGYTFLVVAACIYAESEDSLRVFSAFSSISTIAAIFGNGILPEIQATLAPPATGKMLKGLVYSQVAFEVMEKKSADTSKGMFSLRNLI PRIILRSLYMASCGFVVAMLPFFRDINGIVGALGFIPLDFILPMLLYNMTYRPSKSSGTYWINMVIMVVFSGVGILGAFASIRKLVLDAHRFKLFSSDVV D

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41800			Transmembrane amino acid trans...		Lus10001908 [exp]	0	1
AT1G50910			unknown protein		Lus10043058 [exp]	5.5	0.8631
AT1G76480			unknown protein		Lus10006035 [exp]	6.0	0.8952
AT2G24960			unknown protein		Lus10026250 [exp]	7.5	0.8627
AT4G11640		ATSR	serine racemase (.1)		Lus10008490 [exp]	8.7	0.8863
AT1G19100			Histidine kinase-, DNA gyrase ...		Lus10039959 [exp]	11.7	0.8762
AT5G12040			Nitrilase/cyanide hydratase an...		Lus10025012 [exp]	15.0	0.8700
					Lus10014678 [exp]	16.7	0.8741
AT1G17350			NADH:ubiquinone oxidoreductase...		Lus10027384 [exp]	17.7	0.8576
AT3G13000			Protein of unknown function, D...		Lus10037293 [exp]	20.8	0.8108
AT1G43620		UGT80B1, TT15	TRANSPARENT TESTA 15, UDP-Glyc...		Lus10005004 [exp]	21.8	0.8351

Compare expression of checked genes

Lus10001908 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.