Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24190 114 / 3e-30 SDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT5G51030 110 / 1e-28 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G61830 108 / 7e-28 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G61220 107 / 9e-28 SDR1 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G01800 106 / 4e-27 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT3G59710 101 / 2e-25 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G20760 44 / 4e-05 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G62610 43 / 0.0001 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3), NAD(P)-binding Rossmann-fold superfamily protein (.4) AT1G63380 42 / 0.0001 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT4G09750 42 / 0.0003 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008413 [exp] 290 / 2e-98 AT2G24190 273 / 3e-91 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10019546 [exp] 189 / 9e-59 AT2G24190 253 / 2e-83 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10040933 [exp] 117 / 4e-31 AT3G61220 342 / 1e-118 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10032524 [exp] 115 / 1e-30 AT5G51030 493 / 2e-177 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10043023 [exp] 115 / 2e-30 AT5G51030 495 / 3e-178 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014690 [exp] 114 / 7e-30 AT3G61220 335 / 2e-115 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10014688 [exp] 111 / 4e-29 AT3G61220 348 / 8e-121 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10014689 [exp] 115 / 5e-29 AT3G61220 336 / 2e-112 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10040932 [exp] 110 / 1e-28 AT3G61220 327 / 3e-112 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G158200 [exp] 190 / 1e-58 AT2G24190 283 / 1e-94 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.004G235500 [exp] 130 / 2e-36 AT3G61220 313 / 7e-107 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G080000 [exp] 127 / 5e-35 AT3G61220 332 / 2e-114 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156800 [exp] 124 / 7e-34 AT3G61220 363 / 1e-126 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.012G110200 [exp] 123 / 1e-33 AT5G51030 460 / 1e-164 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G156300 [exp] 123 / 2e-33 AT3G61220 367 / 6e-128 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G157000 [exp] 122 / 3e-33 AT3G61220 406 / 9e-144 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.015G108400 [exp] 122 / 4e-33 AT5G51030 468 / 2e-167 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G156600 [exp] 120 / 1e-32 AT3G61220 348 / 7e-121 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.004G235600 [exp] 115 / 1e-30 AT3G61220 285 / 1e-95 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10001968 pacid=23173752 polypeptide=Lus10001968 locus=Lus10001968.g ID=Lus10001968.BGIv1.0 annot-version=v1.0 ATGGAGATTACAGGGAAGAAACCAACAGCCAGGGTTGCGGTGGTGACGGGAGCAAACAAGAGGATCGGGCTGGAGATAGTGAAGCAACTGGCTGGCCATG GGATTAATACTGTGGTGTTTACTGCCAGAGATGTAAAGAGAGGGACTGATGCAACTTCAAGGCTCCATCAGATGGGACTCCGTAATGTTGTCTTCCATCA GCTTGATGTGCTGGACTCCCTCAGCATCAGCAACTTGGCTGAATTCATCGGCGCGAAATTCGGGGTGCTGGATATTTTGCTTTCAGGGAAGGCAGCTCAT TTGGTAGAAAATGCAGTTAAACATACCTATGAGAAGGCAGAGAAATGCTTAAAAACTAATTTCTATGGTGTCAAAGCCACAACTAAGGCTCTCCTCACAC TTCTTAAGCTTTCAACACATGGTGCTAGCGTAGTTAACATCTCTTCCCTCATGGGAGAGCTTCAGGTAAGGACAATACACAGTTTTTTCTCCCGGGTGAG ACGATTGTCGATTGATTTTGCCTCATCTGCAGAGGATTCCAAGCGAAGACGTGAGAAACGAACTTGGAACTTGGAGACTCTGAATGAGGTCAAGCTGGAT GCAATACTGGAGAGGTTTCTGGAGGATTGCAAAGATGATAACCTCAAGGCTGGTGGGTGGCCGTTGATGCTTCCGGCAGGCAGCTGTGAATGCATACACC AGGATCCTTGCGAAGAGGCACCCCGGGATGAAAATAAACTGCGTTCATCCGGGATTCATTAG
AA sequence Show only first row Show all	>Lus10001968 pacid=23173752 polypeptide=Lus10001968 locus=Lus10001968.g ID=Lus10001968.BGIv1.0 annot-version=v1.0 MEITGKKPTARVAVVTGANKRIGLEIVKQLAGHGINTVVFTARDVKRGTDATSRLHQMGLRNVVFHQLDVLDSLSISNLAEFIGAKFGVLDILLSGKAAH LVENAVKHTYEKAEKCLKTNFYGVKATTKALLTLLKLSTHGASVVNISSLMGELQVRTIHSFFSRVRRLSIDFASSAEDSKRRREKRTWNLETLNEVKLD AILERFLEDCKDDNLKAGGWPLMLPAGSCECIHQDPCEEAPRDENKLRSSGIH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61830			NAD(P)-binding Rossmann-fold s...		Lus10001968 [exp]	0	1
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10025068 [exp]	1.7	0.9626
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10021428 [exp]	2.8	0.9471
AT3G14470			NB-ARC domain-containing disea...		Lus10042117 [exp]	2.8	0.9517
AT3G55230			Disease resistance-responsive ...		Lus10003301 [exp]	3.0	0.9516
AT3G11660		NHL1	NDR1/HIN1-like 1 (.1)		Lus10029406 [exp]	5.0	0.9461
					Lus10002087 [exp]	6.5	0.9377
					Lus10038309 [exp]	6.9	0.8973
AT3G63420		AGG1, ATAGG1	Ggamma-subunit 1 (.1.2)		Lus10014714 [exp]	7.7	0.9047
AT4G06536			SPla/RYanodine receptor (SPRY)...		Lus10010045 [exp]	7.7	0.9451
AT3G07570			Cytochrome b561/ferric reducta...		Lus10016080 [exp]	8.0	0.9377

Compare expression of checked genes

Lus10001968 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.